PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01936.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 505aa    MW: 54890.6 Da    PI: 9.0384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01936.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-16170217148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg W++eEde+l   ++++G g+W+++++  g+ R++k+c++rw +yl
  Zmw_sc01936.1.g00110.1.am.mk 170 RGLWSPEEDEKLMSHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 217
                                   788*******************************************97 PP
2Myb_DNA-binding49.78.7e-16223287147
                                   TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqky 47 
                                   rg +++eE++l+++++++lG++                   +W+ Ia+ ++ gRt++++k++w++y
  Zmw_sc01936.1.g00110.1.am.mk 223 RGTFSQEEEDLIIQLHTMLGNKlhgkrqwrvklmssrgdmvRWSQIAAQLP-GRTDNEVKNFWNSY 287
                                   899************************************************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-25162220IPR009057Homeodomain-like
PROSITE profilePS5129425.226165221IPR017930Myb domain
SuperFamilySSF466892.18E-23168284IPR009057Homeodomain-like
SMARTSM007175.4E-13169219IPR001005SANT/Myb domain
PfamPF002493.4E-15170217IPR001005SANT/Myb domain
CDDcd001673.29E-11173217No hitNo description
Gene3DG3DSA:1.10.10.601.3E-22221292IPR009057Homeodomain-like
SMARTSM007174.7E-14222290IPR001005SANT/Myb domain
PROSITE profilePS5129413.532222292IPR017930Myb domain
PfamPF002492.3E-13223287IPR001005SANT/Myb domain
CDDcd001677.17E-9225288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSWVWRVDRC ESEAPAYEHA LTKICLISIH VPLQSQSSRS ASCATVRCSE AWARARMLYV  60
APPVKASSRE TAAGRRHLPE SDRSLPSRPR PKASSPALAA RLASRSFKPA LRLVWPACHH  120
RLDRSIGVGG RRRRRGRASC LLPLSGLASE RASPAGMAKQ LCGHKKKLRR GLWSPEEDEK  180
LMSHIAKYGH GCWSSVPKLA GLERCGKSCR LRWINYLRPD LKRGTFSQEE EDLIIQLHTM  240
LGNKLHGKRQ WRVKLMSSRG DMVRWSQIAA QLPGRTDNEV KNFWNSYVKK KLRERGIDPA  300
THKPLAAVAA GGDAATTVFC DAEAELIPAA STPLQVPLAE SMLDDVVKLP LDDWTTTAVQ  360
SSLSGYLQAA GCSFGMDALA LQQEQQQRCG GIPAPPVVPS AWCSSTLTSI ADAEHCNNSN  420
SIASASLPWL ELGPNTVTDA GGHVDSYAGA LVELRWSEYF DGAFQAAGSQ QGALQLGQCV  480
YGGGGKDDVA AAAAQIDVHG LSDWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-2416729224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796264.11e-132transcription factor MYB10-like
TrEMBLA0A0A9ASW41e-153A0A0A9ASW4_ARUDO; Uncharacterized protein
STRINGPavir.J03230.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385