PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01933.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 367aa    MW: 40408.6 Da    PI: 6.9398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01933.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-1855102148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT eEd++l d+++++G g+W++ ++  g++R++k+c++rw +yl
  Zmw_sc01933.1.g00080.1.am.mk  55 KGPWTLEEDQKLMDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 102
                                   79********************************************97 PP
2Myb_DNA-binding55.31.5e-17108153148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+eE+e +++++   G++ W++Ia++++ gRt++++k++w+++l
  Zmw_sc01933.1.g00080.1.am.mk 108 RGKFTQEEEETILRLHSAIGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 153
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-2646105IPR009057Homeodomain-like
PROSITE profilePS5129417.79250102IPR017930Myb domain
SuperFamilySSF466891.72E-3252149IPR009057Homeodomain-like
SMARTSM007172.5E-1454104IPR001005SANT/Myb domain
PfamPF002495.4E-1755102IPR001005SANT/Myb domain
CDDcd001671.86E-1157102No hitNo description
PROSITE profilePS5129426.851103157IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-28106158IPR009057Homeodomain-like
SMARTSM007174.9E-17107155IPR001005SANT/Myb domain
PfamPF002492.1E-16108153IPR001005SANT/Myb domain
CDDcd001671.14E-12110153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MCSGDQPSKL SSRKFSGSQG EAACLPPSQL HHSTPVLSHL SMGRAPCCDE NGLKKGPWTL  60
EEDQKLMDYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN YLRPDIKRGK FTQEEEETIL  120
RLHSAIGNKW SAIAKHLPGR TDNEIKNFWN THLKKKLIQM GFDPMTHRPR TDFFAALPQL  180
IALANLRQLV EQRPWDDHTA RLQAEAAQAA KLQYLQSLLQ SAASIATSPS SSSMNTIPGD  240
LDQIGLLSPQ QMSSLSSLPS PSLLESISGQ DIVAGQVPDI QMPSSYFELP VSNDANKNTE  300
HTAKGIVEGD HSTSKTLLMS ENSLPPLADF PISNLGDACS TSSCGGYNTQ FPGWPELFDE  360
QFLSEFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31531575108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953959.10.0transcription factor MYB16
SwissprotQ9S9Z21e-104MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A368PSI80.0A0A368PSI8_SETIT; Uncharacterized protein
STRINGSi017785m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]