PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01909.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 297aa MW: 32823.9 Da PI: 10.0639

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01909.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	30	75	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +WT+ E +++ +a + l g +W+++ar ++ gRt +++++++++ Zmw_sc01909.1.g00100.1.am.mkhc 30 SWTAKENKQFERALAALDLGrpDWEKVARAIP-GRTVGEIVDHYRSL 75 7************9877777******.*********975 PP
2	Myb_DNA-binding	48.5	1.9e-15	145	189	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + kq+G+g+W++I+r++ +Rt+ q+ s+ qky Zmw_sc01909.1.g00100.1.am.mkhc 145 PWTEEEHRLFLLGLKQYGKGDWRSISRYFVHTRTPTQVASHAQKY 189 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.104	26	80	IPR017884	SANT domain
SMART	SM00717	4.5E-5	27	78	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-5	29	75	IPR009057	Homeodomain-like
CDD	cd00167	5.66E-9	30	75	No hit	No description
Pfam	PF00249	4.7E-7	30	75	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.24E-9	30	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.39	138	194	IPR017930	Myb domain
SuperFamily	SSF46689	1.66E-18	139	194	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.8E-17	141	192	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	9.3E-12	142	188	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	142	192	IPR001005	SANT/Myb domain
CDD	cd00167	1.62E-11	145	190	No hit	No description
Pfam	PF00249	6.2E-13	145	189	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MMREAYMEVL PPMDHYASRS NNWFLGPPRS WTAKENKQFE RALAALDLGR PDWEKVARAI 60 PGRTVGEIVD HYRSLEVDVR RIESGAMMPF SGYGGGGGAN AFTLQWDGKG GHGAGDFRHG 120 HRFAGGCGKR HPGLTPEQER KKGVPWTEEE HRLFLLGLKQ YGKGDWRSIS RYFVHTRTPT 180 QVASHAQKYF IRLNSGGKDK RRSSIHDITT VNLNDDQTPS PSQSSLITNQ PKASAPTAAA 240 SQFSLSADTK QHGSVNLPFS SPSRTPRMPA YGMGLQDQGL QCAPLHDQLV ANTSVLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	8e-14	26	98	6	78	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817822.1	1e-167	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-74	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A5HJS5	1e-177	A5HJS5_9POAL; MYB_Al protein
STRING	Si002426m	1e-159	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7886	33	48

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]