PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01854.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 302aa    MW: 32359.6 Da    PI: 9.7271
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01854.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-071051233957
                                   S-HHHHHHHHHHHHHHHHC CS
                      Homeobox  39 LterqVkvWFqNrRakekk 57 
                                   + +++V++WFqNrR + ++
  Zmw_sc01854.1.g00090.1.am.mk 105 VRDANVFYWFQNRRSRSRR 123
                                   6799************997 PP
2Wus_type_Homeobox41.24e-141011244164
             Wus_type_Homeobox  41 eyGkiedkNVfyWFQNrkaRerqk 64 
                                   ++G+++d+NVfyWFQNr++R+r++
  Zmw_sc01854.1.g00090.1.am.mk 101 RFGAVRDANVFYWFQNRRSRSRRR 124
                                   7*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.94E-699130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-4103129IPR009057Homeodomain-like
PfamPF000464.0E-5104123IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MHAPGHGRWP HVVIFSSRSL IFTRARADTA AATVDHLCVS RPFTLNLKDS PATCPSQQHR  60
NPTRAPTGSP KRGQLILPNF AVPPVRTSST LTHSLTPGRP RFGAVRDANV FYWFQNRRSR  120
SRRRARQLQQ ACGAAAQLPS AAVIHGVNDS ASHYVMHGHG LARTGSVPTS APVQSAAAAA  180
PHFFADDVDG GDDLFAISRQ MGLLPRGDDH RCGYTANDVS AQLSYHQPTA TATTSIQVFI  240
NGVVYEVPGG GALLDLAGTF GRDAVLVHSS GEILPVNEQG ILMKSLQMGE CYYLVGTIIG  300
LH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683622.11e-88WUSCHEL-related homeobox 10
SwissprotA2YST11e-58WOX10_ORYSI; WUSCHEL-related homeobox 10
TrEMBLA0A1E5VIR55e-94A0A1E5VIR5_9POAL; WUSCHEL-related homeobox 10
STRINGSi015065m2e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109