PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01769.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 31657.6 Da PI: 7.2532 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 39 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WTteE + + +a ++ + +W+++a++++ +t ++ ++++++ Zmw_sc01769.1.g00170.1.sm.mkhc 39 TWTTEENKVFEKALALIDRNapdRWEKVAAMLP-SKTVADVMNHYNDL 85 7*****************99*************.***********986 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.5e-14 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + k++G g+W+ I+r + ++Rt+ q+ s+ qky Zmw_sc01769.1.g00170.1.sm.mkhc 144 PWTEDEHKLFLLGLKKYGRGDWRNISRNFVTTRTPTQVASHAQKY 188 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.628 | 35 | 89 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-8 | 36 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.59E-11 | 38 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-7 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 39 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.23E-7 | 39 | 85 | No hit | No description |
PROSITE profile | PS51294 | 17.105 | 137 | 193 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.44E-17 | 139 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-17 | 140 | 191 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.0E-11 | 141 | 187 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 141 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-11 | 144 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.06E-11 | 144 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MMAEMWTQML LPTLGSCFAG QSWWPWLDRH AGSGGGGDTW TTEENKVFEK ALALIDRNAP 60 DRWEKVAAML PSKTVADVMN HYNDLENDVG FIEAGLVPFP HYSSSPPASG FTLDYWDGSD 120 GVFRRGCCLK RGRGPDQERK KGVPWTEDEH KLFLLGLKKY GRGDWRNISR NFVTTRTPTQ 180 VASHAQKYFI RLNSGGKDKR RSSIHDITTA NLPLPDDSHG GNASPSPSSA LTTASNPAGA 240 ADQFGTLSDV KPFMPPFPGV SHPYANVKLE PTSSLASGLG FDGNVLLQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-16 | 31 | 105 | 2 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815076.1 | 1e-158 | transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q8S9H7 | 1e-74 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2T7DED3 | 1e-157 | A0A2T7DED3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16113.1.p | 1e-145 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Publications ? help Back to Top | |||
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