PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01572.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 271aa MW: 29617.9 Da PI: 10.3032

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01572.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	20	65	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l+++v ++G+ +W++Ia+++ gR++k+c++rw++ Zmw_sc01572.1.g00070.1.am.mkhc 20 RGHWRPGEDQKLKELVDKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 65 899***************************.*********996 PP
2	Myb_DNA-binding	61.8	1.4e-19	73	116	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ + Zmw_sc01572.1.g00070.1.am.mkhc 73 RPFTEEEEERLLAAHRAHGNK-WALIARHFP-GRTDNAVKNHWHVV 116 69*****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.786	15	66	IPR017930	Myb domain
SuperFamily	SSF46689	6.74E-30	18	113	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-13	19	68	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-16	20	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-26	21	73	IPR009057	Homeodomain-like
CDD	cd00167	1.50E-13	23	64	No hit	No description
PROSITE profile	PS51294	28.4	67	121	IPR017930	Myb domain
SMART	SM00717	3.8E-17	71	119	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	72	115	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-22	74	119	IPR009057	Homeodomain-like
CDD	cd00167	1.26E-8	83	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MASSSTTNTS NGAKSSSCPR GHWRPGEDQK LKELVDKYGP QNWNSIAEKL EGRSGKSCRL 60 RWFNQLDPRI NKRPFTEEEE ERLLAAHRAH GNKWALIARH FPGRTDNAVK NHWHVVMARR 120 SRERSRLLAR TAYSSSSPSS YPFVTAGEQQ PGSSLCFGFS KSRLGSSGGL FGSSPAAPRI 180 PFFKSYGTIN GGTGASFEVG RYSYGGKQPA ATPLSISFSS PREALGMDLG HGFHGGNDIN 240 KKDYHVDGGD DTMSTRKDVP FIDFLGVGVS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-32	20	120	7	107	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979129.1	1e-121	transcription factor CSA
TrEMBL	K3ZJJ8	1e-119	K3ZJJ8_SETIT; Uncharacterized protein
STRING	Si026751m	1e-120	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260