PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01396.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 583aa    MW: 64736.6 Da    PI: 10.5395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01396.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.1e-14227276148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                                   r+rW +eEd  l  +v+q+G++ W++++++m+  + R +k+c +rw +yl
  Zmw_sc01396.1.g00060.1.am.mk 227 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 276
                                   89**********************************************97 PP
2Myb_DNA-binding35.52.3e-11282326147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  Zmw_sc01396.1.g00060.1.am.mk 282 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 326
                                   6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.649222276IPR017930Myb domain
SMARTSM007171.3E-11226278IPR001005SANT/Myb domain
SuperFamilySSF466896.24E-21227321IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-20229283IPR009057Homeodomain-like
CDDcd001673.11E-8229276No hitNo description
PfamPF139219.8E-13230290No hitNo description
PROSITE profilePS5129423.375277331IPR017930Myb domain
SMARTSM007172.8E-10281329IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-15284325IPR009057Homeodomain-like
CDDcd001671.00E-7286327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MRWVGKGRNA GGGGGGSDLI RRQATPSVRP SVAHYRREVS SATERESERE KETEKAFAVR  60
AACGSLRVPW RLPALRAPVH SSQQQLLLPL PLQQLAVSIY TRAGRAFFAF PPVERSTELF  120
SSGGGPRLSF PPLLLSTTTT AAVLGSLGPA CPNFSLRPSA LYHHLAPHSQ PAPAPASSSS  180
SSSPGRAIIR ASVQALTQPP GQERSGRGED GVAVPLDGRW PVQMKERQRW RPEEDAVLRA  240
YVRQYGPREW HLVSQRMNVA LDRDAKSCLE RWKNYLRPGI KKGSLTEEEQ RLVIRLQAKH  300
GNKWKKIAAE VPGRTAKRLG KWWEVFKEKQ QRELRDSRRP PPEPSPDERG RYEWLLENFA  360
EKLVNERQTA PLLMAAPGLP PWLSSNAGPA AITQPPSPSV TLSLASAAVA APSPSAVPHG  420
APWMPPERAA AEAFGFASPQ ALPGGAPPNP GMAVVEGQAL AELVECCREL EEGQRAWAAH  480
RREAAWRLKR VEQQLEAERE MRRREMWDEF EAKMRAMRVE QAAAAERVER EYREKAAELR  540
RDAQAKEEKM AEQWAAKHAR VAKFLEQVGG CHPPRPWSSA EMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-15230323797C-Myb DNA-Binding Domain
1msf_C6e-15230323797C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105509.11e-164protein rough sheath 2
RefseqXP_025805303.11e-164protein rough sheath 2
SwissprotQ9S7B21e-165RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A3L6RDW81e-166A0A3L6RDW8_PANMI; Protein rough sheath 2
STRINGGRMZM2G403620_P011e-163(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654