PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01394.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 571aa    MW: 62562.2 Da    PI: 11.4419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01394.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17356403148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g W++eEde+l + ++++G g+W+t+++  g+ R++k+c++rw +yl
  Zmw_sc01394.1.g00080.1.am.mk 356 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 403
                                   678*******************************************97 PP
2Myb_DNA-binding45.32e-14409451145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rg++++eE++l++++++ lG++ W+ I+ +++ gRt++++k+ w+
  Zmw_sc01394.1.g00080.1.am.mk 409 RGAFSQEEEDLIIELHAVLGNR-WSQISTRLP-GRTDNEIKNLWN 451
                                   89********************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-27348406IPR009057Homeodomain-like
PROSITE profilePS5129418.396351403IPR017930Myb domain
SuperFamilySSF466894.4E-29354450IPR009057Homeodomain-like
SMARTSM007176.5E-12355405IPR001005SANT/Myb domain
PfamPF002498.0E-15356403IPR001005SANT/Myb domain
CDDcd001677.94E-11359403No hitNo description
PROSITE profilePS5129424.63404458IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-24407458IPR009057Homeodomain-like
SMARTSM007176.0E-13408456IPR001005SANT/Myb domain
PfamPF002493.2E-13409451IPR001005SANT/Myb domain
CDDcd001672.03E-9411451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MWRCYAFVDD CLYDTRAELS RVRSTSLLFG SAEPPPSMTP ALSFVVAGYR GPEPRRATDK  60
KPLVSADHAT RQQRAMTGRT TKRNTPASAG RPVPRVRGND GVVVRAVGRR CRLGSXXXXG  120
GTSLPLGLGR GARAARAVVA HRPPLRPARR ASRSTRSSNL LLRSDKAPSR RSYVVPTTRS  180
SSSSSSNFRR RGRSRVTSIP AEVRRRPVDR KGQAAPSAAR EPVTVLKDRS YGRVVSAVCG  240
GYTRARSLLP CCPAPRADAT SSSSSIRPFR RARAHSGPGR RVLVPAGLLA AGERNRTDGV  300
AAAKGRRPER GAKTEPCSLA LYARAHSSYR LQSSASASAF LSMGRHSCCY KQKLRKGLWS  360
PEEDEKLMNH ITKHGHGCWS TVPKLAGLQR CGKSCRLRWI NYLRPDLKRG AFSQEEEDLI  420
IELHAVLGNR WSQISTRLPG RTDNEIKNLW NSSIKKKLRQ KGIDPNTHKP LAEVEHSKAA  480
PIISTERTSE SSDFDPSIGG AIGNLNHIMS ETAQSPELLP VLGHQTINNL EELESRVPNS  540
TGIPLILAAP VAEEAVEAKA WDLSCRERAH Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-283544585108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188205RRRGRSRVTSIPAEVRRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794