PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01366.1.g00290.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 401aa MW: 45470.2 Da PI: 11.7799

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01366.1.g00290.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	291	338	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl Zmw_sc01366.1.g00290.1.am.mk 291 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 338 79********************************************97 PP
2	Myb_DNA-binding	54.2	3.4e-17	344	389	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Zmw_sc01366.1.g00290.1.am.mk 344 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 389 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-25	283	341	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.639	286	338	IPR017930	Myb domain
SuperFamily	SSF46689	3.29E-30	288	385	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-15	290	340	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	291	338	IPR001005	SANT/Myb domain
CDD	cd00167	1.82E-11	293	338	No hit	No description
PROSITE profile	PS51294	26.333	339	393	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-26	342	393	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-17	343	391	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-16	344	389	IPR001005	SANT/Myb domain
CDD	cd00167	2.15E-11	346	389	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MRADRTALLV QAAEHDDEHS RNVGLLLMVG WRVASFSEAA TSRCQRHSKV TKRLNCGSSD 60 EARSSRDPET SLCLLPRRKL AASRQMQSNL LLPENTSVWS CNSAYPRTPS RACVRFQDSR 120 RGRPVRLWAR SDESSRAART GRAPNAVSIY RPRWRVGTPR YVRAWPTSAA PTRRVRLGRR 180 RTSPRNRARR DLIDLNGGVQ TEAGRRGVRC NSEPSCGRTV RLTCGAHLVR GRVLVARKPT 240 KILVQRWAVI TSEYTELLRP ATLPSSHSAI TGLSARMGRS PCCEKEAGLK KGPWTPEEDQ 300 KLLAYIEQHG HGCWRSLPAK AGLRRCGKSC RLRWTNYLRP DIKRGKFTLQ EEQTIIQLHA 360 LLGNRWSAIA THLPKRTDNE IKNYWNTHLK KRLARMGIDP V

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MRADRTALLV QAAEHDDEHS RNVGLLLMVG WRVASFSEAA TSRCQRHSKV TKRLNCGSSD  60
EARSSRDPET SLCLLPRRKL AASRQMQSNL LLPENTSVWS CNSAYPRTPS RACVRFQDSR  120
RGRPVRLWAR SDESSRAART GRAPNAVSIY RPRWRVGTPR YVRAWPTSAA PTRRVRLGRR  180
RTSPRNRARR DLIDLNGGVQ TEAGRRGVRC NSEPSCGRTV RLTCGAHLVR GRVLVARKPT  240
KILVQRWAVI TSEYTELLRP ATLPSSHSAI TGLSARMGRS PCCEKEAGLK KGPWTPEEDQ  300
KLLAYIEQHG HGCWRSLPAK AGLRRCGKSC RLRWTNYLRP DIKRGKFTLQ EEQTIIQLHA  360
LLGNRWSAIA THLPKRTDNE IKNYWNTHLK KRLARMGIDP V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-26	289	393	5	108	B-MYB

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP72196	2	2