PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01364.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 321aa    MW: 35379.4 Da    PI: 4.8671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01364.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-192269148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+WT eEd+llv++v+ +G g+W++ ar  g++Rt+k+c++rw++yl
  Zmw_sc01364.1.g00030.1.am.mkhc 22 RGPWTVEEDLLLVNYVATHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 69
                                    89********************************************97 PP
2Myb_DNA-binding49.68.8e-1675118146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg+ T++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Zmw_sc01364.1.g00030.1.am.mkhc  75 RGNITPQEQLLILELHSRWGNR-WSKIAQQIP-GRTDNEIKNYWRT 118
                                     7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6591773IPR017930Myb domain
SuperFamilySSF466896.36E-3120116IPR009057Homeodomain-like
SMARTSM007173.8E-162171IPR001005SANT/Myb domain
PfamPF002498.6E-182269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-232376IPR009057Homeodomain-like
CDDcd001672.77E-122469No hitNo description
SMARTSM007177.5E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129417.91974124IPR017930Myb domain
PfamPF002499.3E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2277123IPR009057Homeodomain-like
CDDcd001673.42E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDMAHERDAS SEEKVMAGEL RRGPWTVEED LLLVNYVATH GEGRWNSLAR SAGLKRTGKS  60
CRLRWLNYLR PDLRRGNITP QEQLLILELH SRWGNRWSKI AQQIPGRTDN EIKNYWRTRV  120
QKHAKQLKCD VNSQQFKDVM RYLWMPRLVE RIQAAASAAA GEAQHEHQQH AAADTPLSSW  180
QNGGDDGLYA SPELLTTDAC WPSEYCSAAA GVQLVDTPAV PELSSTTAGS SSPSMDSGAG  240
ARPAPVGGAE WFTAACDASS AAAVSGMDLL STQQQQPCLL GETWTSELPE LGVADFELGS  300
FDVESIWSMD ESLWYTQAQG V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261312218126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791351.11e-179transcription factor MYB2-like
SwissprotQ10MB41e-154MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1E5W9A30.0A0A1E5W9A3_9POAL; Transcription factor MYB108
STRINGSi035722m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]