PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01248.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 543aa    MW: 59451.7 Da    PI: 9.1909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01248.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-15105152148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT eEd  l++ v+  G g+W+  ar  g++Rt+k+c++rw++yl
  Zmw_sc01248.1.g00070.1.am.mk 105 KGPWTVEEDAVLAHHVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 152
                                   79********************************************97 PP
2Myb_DNA-binding42.31.7e-13158201146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg + + E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zmw_sc01248.1.g00070.1.am.mk 158 RGDFAPREQLLILELHFRWGNR-WSRIAAHLP-GRTDNEVKNYWRT 201
                                   6778899***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.578100156IPR017930Myb domain
SuperFamilySSF466893.91E-28103199IPR009057Homeodomain-like
SMARTSM007177.3E-13104154IPR001005SANT/Myb domain
PfamPF002491.8E-13105152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-19106159IPR009057Homeodomain-like
CDDcd001672.16E-9107152No hitNo description
SMARTSM007172.2E-12157205IPR001005SANT/Myb domain
PROSITE profilePS5129415.36157207IPR017930Myb domain
PfamPF002491.3E-12158201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-21160205IPR009057Homeodomain-like
CDDcd001671.69E-9163201No hitNo description
PROSITE profilePS513759.482451485IPR002885Pentatricopeptide repeat
PfamPF130413.6E-8451497IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MRRPKKRRKK LTKLSSSVRA ALEKGGRRRL VVATASSSSS LNSSPTRFFC PASYAHSSLQ  60
LEEVSDPSRS MDALWMGACE WSSAAASATS IEDEEAAAAA AELRKGPWTV EEDAVLAHHV  120
AANGEGRWNE LARAAGLRRT GKSCRLRWLN YLRPGVRRGD FAPREQLLIL ELHFRWGNRW  180
SRIAAHLPGR TDNEVKNYWR TRVQKHARQL GCDVGSRRFR DVMRQHWMPR LVERIHADSG  240
AAVSQSQPAT TASKQPSYHY IASNNCGSHA KPCASPDASC VTAGPSSPES SHEAQFQTNS  300
PIMDAAGAGY SSSTEQCQYG SGSGDMLDGS WSELLARAGP GNADSTGLHD FEFGEIHTAV  360
LNRSHKKKPT RFSMTWSMVN YWSSVVNGLR SMLDPGRLCL ESNGCDELDR RLCEIRSWKH  420
ASNIHQLPAS LCVPGAVHHA RGVFDQMSDR NVVAWTAMLF GYASDGHHRE ALDLFPRMAA  480
ADVASNEFTL SSVLAACRGG GGGAAGRRCG DSVHAVAMRR GVDRVPYVVN ELVDAYASIS  540
WTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2310220524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
119RRPKKRRKK
2310PKKRRKKL
348KKRRK
449KKRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817284.11e-112transcription factor JAMYB-like
TrEMBLA0A2S3HVZ61e-111A0A2S3HVZ6_9POAL; Uncharacterized protein
STRINGPavir.Eb01219.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330