PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01208.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 498aa    MW: 53434.2 Da    PI: 9.7819
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01208.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-19213258147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+W++eEd+ l ++v+++G ++W+tI r+++ gR++k+c++rw + 
  Zmw_sc01208.1.g00030.1.am.mk 213 RGPWSPEEDDMLRRLVERHGARNWTTIGREIP-GRSGKSCRLRWCNQ 258
                                   89******************************.***********985 PP
2Myb_DNA-binding54.33.2e-17265307145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   r ++T+eEd  +v+a+++lG++ W++Iar ++ gRt++ +k++w+
  Zmw_sc01208.1.g00030.1.am.mk 265 RRPFTAEEDATIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 307
                                   679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.49E-31210306IPR009057Homeodomain-like
PROSITE profilePS5129425.148210263IPR017930Myb domain
SMARTSM007178.2E-17212261IPR001005SANT/Myb domain
PfamPF002494.4E-18213258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-25214266IPR009057Homeodomain-like
CDDcd001672.59E-15215257No hitNo description
SMARTSM007171.1E-15264312IPR001005SANT/Myb domain
PROSITE profilePS5129419.978265314IPR017930Myb domain
PfamPF002491.1E-14265307IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-23267314IPR009057Homeodomain-like
CDDcd001679.50E-12267307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MGSSKATTPN RGSGEKDADV PGCTPVRCGR RTPRGEAVDG RDELTTGLGA PHVRASGASR  60
RNGSSPAMLE DGMATDGWIS TARPAEVVTA ASSYIIRRET GRRRFGHGHV PPSPRRGVAF  120
VDGEFPLHST SALLSACRLG RISVRAQDDG GSCSSFVRSR CCELRVPSYD EPTPPAIRLL  180
KTTSAGGYDC VRWLRGSRRV PWVTAVLPCD RIRGPWSPEE DDMLRRLVER HGARNWTTIG  240
REIPGRSGKS CRLRWCNQLS PQVERRPFTA EEDATIVRAH ARLGNRWAAI ARLLPGRTDN  300
AVKNHWNCSL KRKLAAANAE PGAEDAVEFE RPCKRANLSP DSPLGSGSGS DRSDLSHGAS  360
SGSGQIYRPV ARSGGFEPVD CAMSQRRLGE DPLTSLSLSL PGMDNGFHHD RAHSQFQVLP  420
ASPSPPPPPA APAAAPVPAA ASYPFNPEFM AAMQDLIRTE VQRYMASVGV RAGCGGAALM  480
EGVMRAAAER VGAVGRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-382103144108B-MYB
1h88_C9e-3820631451159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-3820631451159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965791.11e-138transcription factor MYB44
TrEMBLK3XYD01e-136K3XYD0_SETIT; Uncharacterized protein
STRINGSi006938m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154