PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01073.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 129aa    MW: 14600.8 Da    PI: 9.0349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01073.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-183683148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+ Ed +l++++k++G+g+W+++ r  g+ R++k+c++rw ++l
  Zmw_sc01073.1.g00060.1.sm.mk 36 KGPWTAAEDSILLEYIKKHGKGNWNAVQRNTGLSRCGKSCRLRWANHL 83
                                  79******************************************9996 PP
2Myb_DNA-binding285.2e-0989118131
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartm 31 
                                   +g++T+eE+ l +++++++G++ W++ a ++
  Zmw_sc01073.1.g00060.1.sm.mk  89 KGAFTPEEENLVIQLHHKMGNR-WAKMATRV 118
                                   799*******************.***99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.73187IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-233386IPR009057Homeodomain-like
SMARTSM007172.9E-153585IPR001005SANT/Myb domain
PfamPF002494.8E-163683IPR001005SANT/Myb domain
SuperFamilySSF466892.59E-2537113IPR009057Homeodomain-like
CDDcd001672.21E-113883No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1487121IPR009057Homeodomain-like
PROSITE profilePS512949.69388129IPR017930Myb domain
SMARTSM007170.07788126IPR001005SANT/Myb domain
PfamPF002493.1E-889118IPR001005SANT/Myb domain
CDDcd001671.00E-491123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MNRVKSEDDC EMVLEDEMDS PPPAVVSPPS GPPQNKGPWT AAEDSILLEY IKKHGKGNWN  60
AVQRNTGLSR CGKSCRLRWA NHLRPNLKKG AFTPEEENLV IQLHHKMGNR WAKMATRVSC  120
RAYPLLCTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-21111152105MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970317.12e-56transcription factor GAMYB
SwissprotA2WW875e-54GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A0C6WCK44e-56A0A0C6WCK4_9POAL; ScMYB9 protein
TrEMBLK3XG875e-55K3XG87_SETIT; Transcription factor
STRINGSi000907m8e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664