PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00893.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 303aa MW: 33230.2 Da PI: 5.9912

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00893.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.4e-07	36	80	2	44
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g WT eE + + +a + + +W+++a+ ++ gRt ++ s++ Zmw_sc00893.1.g00040.1.sm.mk 36 GVWTLEENKMFERALANVDWDapdRWERVASFLP-GRTVADVASHF 80 78**************99999*******.********8 PP
2	Myb_DNA-binding	43.4	7.7e-14	147	191	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky Zmw_sc00893.1.g00040.1.sm.mk 147 PWTEEEHKLFLIGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 191 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.1E-5	34	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-4	35	82	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.272	36	84	IPR017877	Myb-like domain
Pfam	PF00249	1.1E-5	36	80	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.59E-10	36	91	IPR009057	Homeodomain-like
CDD	cd00167	9.12E-6	38	80	No hit	No description
PROSITE profile	PS51294	18.329	140	196	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-17	142	196	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-17	143	194	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	9.0E-12	144	190	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-11	144	194	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-11	147	191	IPR001005	SANT/Myb domain
CDD	cd00167	1.42E-10	147	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MMKESWMEVL PPPPAAPYFA GQAGGWLLQD RMAGGGVWTL EENKMFERAL ANVDWDAPDR 60 WERVASFLPG RTVADVASHF DDLENDVYFI EAGLVPLPHY GAGGGGSQSA EFTFDWDAGD 120 LGFKRSCYVV GGKGGRGPDQ ERKKGVPWTE EEHKLFLIGL KKYGRGDWRN ISRNFVTSRT 180 PTQVASHAQK YFIRLNSGGK DKRRSSIHDI TTVNLPDEDS SNPSPSPPSV VAATSTPSSG 240 GPAMSEQFGV LVDSKPAPPP MGQQQHHFLP HPYDNVKLEP HHGGIFDDSV LMQMQCGQLQ 300 PLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-16	35	114	8	87	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961904.1	1e-167	transcription factor DIVARICATA
Swissprot	Q8S9H7	2e-77	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	K3Z8E6	1e-166	K3Z8E6_SETIT; Uncharacterized protein
STRING	Si022816m	1e-167	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]