PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00788.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 337aa    MW: 37464.7 Da    PI: 5.1961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00788.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Zmw_sc00788.1.g00150.1.sm.mk 14 RGLWSPEEDEKLIRYITTHGYGSWSEVPEKAGLQRCGKSCRLRWINYL 61
                                  788*******************************************97 PP
2Myb_DNA-binding54.33.1e-1767111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rgr+++eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
  Zmw_sc00788.1.g00150.1.sm.mk  67 RGRFSAEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                                   89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.045961IPR017930Myb domain
SuperFamilySSF466894.87E-3011108IPR009057Homeodomain-like
SMARTSM007175.0E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
CDDcd001671.99E-111761No hitNo description
PROSITE profilePS5129425.4962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-2565116IPR009057Homeodomain-like
SMARTSM007174.4E-1766114IPR001005SANT/Myb domain
PfamPF002497.8E-1667111IPR001005SANT/Myb domain
CDDcd001676.44E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGQHTCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGSWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF SAEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRNKP  120
ASTTTSSTSR QCSTVTAASD TAHGQLQTLP FSVADHQLDA IIDQSLALPS SKLAAGQDSP  180
PAEPLPPQHC PFFMFDATSV SASSSLSPAA AEAQLQHPFL TFTTAAMDMP SYQLPPLVDD  240
TSMTMSALDC SIFGEERCQD HHEGNKDQAA AGMSNGGCCY EQQEQEPEQQ LGHEQWDDES  300
AQHLLMWDDD QELTPSNLEL MQNGAPSLLF MGPNDHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822193.11e-161myb-related protein 308
TrEMBLA0A2T7D3G11e-169A0A2T7D3G1_9POAL; Uncharacterized protein
STRINGPavir.Fb00364.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757