PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00717.1.g00310.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 332aa    MW: 35377.6 Da    PI: 9.3984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00717.1.g00310.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-174085147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  r  W + Ed +l+d+v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Zmw_sc00717.1.g00310.1.am.mk 40 RSHWRPAEDARLKDLVAQHGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 85
                                  678*****************************.***********996 PP
2Myb_DNA-binding482.8e-1592136147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r +++ +E+ +l  a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Zmw_sc00717.1.g00310.1.am.mk  92 RRAFSSDEETRLMAAHRAYGSK-WALIARLFP-GRTDNAVKNHWHVL 136
                                   6789******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0093590IPR017930Myb domain
SMARTSM007174.1E-133988IPR001005SANT/Myb domain
PfamPF002491.4E-154085IPR001005SANT/Myb domain
SuperFamilySSF466899.73E-2740136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-244293IPR009057Homeodomain-like
CDDcd001674.34E-134384No hitNo description
PROSITE profilePS5129417.1291141IPR017930Myb domain
SMARTSM007171.5E-1091139IPR001005SANT/Myb domain
PfamPF002491.4E-1292135IPR001005SANT/Myb domain
CDDcd001674.74E-994136No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1794139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAAGSFGPAP PAAGEQVVVA GDGCEVEQGR GGQGKKLCAR SHWRPAEDAR LKDLVAQHGP  60
QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI TRRAFSSDEE TRLMAAHRAY GSKWALIARL  120
FPGRTDNAVK NHWHVLTARR KREQSGSLRR RKSTTSSSPL STPAPVIPSH HGPPPVVLRQ  180
HHYPSPHGVL HEAAVYSGDS DESASTCTTD LSLGPAFSAL SPARHHQTLP SDDCGGKSAP  240
PFFDFLGVGA TSSGSTSPGG GEGLRTMISP TLSWLTCLGI RRWVSERSST AMPLGNQAGQ  300
CVGGGVAGNV DGLEAVEEPA AQGGSKQMEQ RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-28431417104C-Myb DNA-Binding Domain
1msf_C5e-28431417104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138150RRKREQSGSLRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817647.14e-88transcription factor CSA-like
SwissprotQ5NBM85e-81CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A2S3HWA81e-86A0A2S3HWA8_9POAL; Uncharacterized protein
STRINGPavir.Ea01097.1.p2e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]