PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00644.1.g00200.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 442aa    MW: 48134.9 Da    PI: 6.4575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00644.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rgrWT+eEd+ l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Zmw_sc00644.1.g00200.1.am.mk 14 RGRWTAEEDKVLASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                                  8*******************************99************97 PP
2Myb_DNA-binding28.82.9e-091772012248
                                   T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqkyl 48 
                                   g W++Ia++++ gRt++++k++w+++l
  Zmw_sc00644.1.g00200.1.am.mk 177 G-WSLIASHLP-GRTDNEIKNYWNSHL 201
                                   5.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129421.182965IPR017930Myb domain
SMARTSM007176.3E-121363IPR001005SANT/Myb domain
PfamPF002492.1E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.56E-201588IPR009057Homeodomain-like
CDDcd001675.88E-101661No hitNo description
Gene3DG3DSA:1.10.10.605.3E-196585IPR009057Homeodomain-like
SMARTSM007176.2E-1066203IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-19174205IPR009057Homeodomain-like
SuperFamilySSF466891.87E-7176206IPR009057Homeodomain-like
PfamPF002493.0E-7177201IPR001005SANT/Myb domain
CDDcd001672.05E-6178201No hitNo description
PROSITE profilePS500906.632178201IPR017877Myb-like domain
PfamPF066403.4E-52219419IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDKVLASYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADVKRGNI SKEEEDIIIK LHATLGNRAG RMESTASGQL ASMVITADRL TEEPISINLL  120
GAVGARVRRV RSLLLLLLLA CHAVTLEATR VAHAWHGMAC SPDHLTSPRS RFVKYSGWSL  180
IASHLPGRTD NEIKNYWNSH LSRQIHTYRR IYTAGNDTTI TIDITKLHSA EKRRGGRTPG  240
RRGKQADPEP EPAEQSGKLE KRVDASSPSD DGARSAVVDP DGPNQRTNSV DVDGNTPGHG  300
GPCSEDATGP VEMEPLDIGL WEAESEMDME ALLLSTTGTG GIGDGSGSFA MGLVDAVGDA  360
PVDDLLDVDW DGFAAHLWGD PGQNEQNDHR ETAQAAEPQA AAGCDPEPEE LESFATWLLR  420
TRRTCAHVSR RFFVERHTGV SG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984641.16e-70myb-related protein P
SwissprotP278987e-51MYBP_MAIZE; Myb-related protein P
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]