PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00500.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 286aa MW: 30122.8 Da PI: 7.5026

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00500.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.2e-07	14	63	3	44
SS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrw 44 +WT eEd+ + +av+ + tW ++ ++ Rt+++++ ++ Zmw_sc00500.1.g00140.1.sm.mkhc 14 AWTREEDKAFENAVANAAAPpadgapdeTWFSVLAESVPSRTAEEVRRHY 63 6*************************99999887777********9 PP
2	Myb_DNA-binding	39	1.8e-12	133	177	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Zmw_sc00500.1.g00140.1.sm.mkhc 133 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 177 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1	11	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-4	14	67	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.342	15	67	IPR017877	Myb-like domain
SuperFamily	SSF46689	5.24E-6	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.873	126	182	IPR017930	Myb domain
SuperFamily	SSF46689	6.75E-17	128	183	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-17	130	180	IPR006447	Myb domain, plants
SMART	SM00717	2.3E-10	130	180	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-11	131	176	IPR009057	Homeodomain-like
CDD	cd00167	8.81E-10	133	178	No hit	No description
Pfam	PF00249	6.9E-11	133	177	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MSSAAATATE AAAAWTREED KAFENAVANA AAPPADGAPD ETWFSVLAES VPSRTAEEVR 60 RHYEALVEDV GAIEAGRVPL PRYAGEESDG AAAASSTKDG GGGSGHRRDE RKGSVDAGKS 120 CSKAEQERRK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV ASHAQKYFIR 180 LNSMNRDRRR SSIHDITSVN AGDVAAAGGA PITGGPAAAM PMGPGGMKHH HPPPPMGMYG 240 HAPMGHPVAG HMVAPAAVGT PVMFPPGHAP YVMPVGYPAP PAKMHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:22773748}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q8LH59}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455466.1	1e-161	transcription factor MYBS1
Swissprot	B8A9B2	1e-126	MYBS1_ORYSI; Transcription factor MYBS1
Swissprot	Q8LH59	1e-126	MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBL	A0A0A9DMW9	1e-164	A0A0A9DMW9_ARUDO; Uncharacterized protein
STRING	Sb03g011280.1	1e-161	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9466	30	41

Publications ? help Back to Top
Hong YF, et al. Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals. Plant Cell, 2012. 24(7): p. 2857-73 [PMID:22773748]