PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00495.1.g00280.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 658aa    MW: 71563.7 Da    PI: 7.5153
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00495.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-141562148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT eEd+ lv ++ + G g W+  ar  g++R +k+c++rw++yl
  Zmw_sc00495.1.g00280.1.am.mk 15 KGPWTLEEDLVLVSYISENGEGAWDNLARAAGLNRNGKSCRLRWLNYL 62
                                  79********************************************97 PP
2Myb_DNA-binding40.37.2e-1368111146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T+ Ed  + ++    G++ W++Ia++++ gRt++++k++w++
  Zmw_sc00495.1.g00280.1.am.mk  68 RGSITEAEDAVIRELQSTIGNK-WSKIAKHLP-GRTDNEIKNYWRT 111
                                   7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6091062IPR017930Myb domain
SuperFamilySSF466895.47E-2813109IPR009057Homeodomain-like
SMARTSM007177.7E-121464IPR001005SANT/Myb domain
PfamPF002493.9E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-181668IPR009057Homeodomain-like
CDDcd001671.66E-81762No hitNo description
PROSITE profilePS5129423.24163117IPR017930Myb domain
SMARTSM007172.1E-1267115IPR001005SANT/Myb domain
PfamPF002492.3E-1168111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2269116IPR009057Homeodomain-like
CDDcd001671.36E-972111No hitNo description
SuperFamilySSF537562.96E-32411654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MEARTRGGEA AAVRKGPWTL EEDLVLVSYI SENGEGAWDN LARAAGLNRN GKSCRLRWLN  60
YLRPGVRRGS ITEAEDAVIR ELQSTIGNKW SKIAKHLPGR TDNEIKNYWR TRIQRKRPPA  120
MTMGAGAVSE GASSSSGWAS PDSSDAGAGA RDCWLFMQPK TEPQACLATG VIKSEGASSA  180
LASRDSSNAS DDWYTQASHP AYHSSSGLGL AADHLGTVGV DAATAAQFFS STSEFADGFW  240
NALNNFWETV PWRVEFPVCD QTQWTNDRLR FPKRVPSPLS APCPLSNLSH HHRPHMQDTK  300
RLGGPLAELF ATRPISCFVV VTFSIFFERG CHLFYPSLGS VDRLRRSNAC VVAGCGNGAP  360
GVSGAALEVG SGARGEASPS RRCSIDLSVS TSGKRLKSGE AMVIKNEHGP VHILFFPFLA  420
PGHLIPIADM AALFAARGVK CTILTTPANA VIIRSAVDRA NDGFRGSDAP AIDIAVVPFP  480
DVGLPPGTES ASAVNSPAGR DKFFQGIQLL CEPFNQFLAE NPQDAVVSDS FFDWSADAAA  540
AHGVPRLAFF GSSMFAQACT DNMLRNNPLE SAPENPDALV ALSGLPHRVE LLRSQMLDPK  600
KRQWHWDYFQ RMNAADQRSY GELFNSFHEL EPEFLKYYAT TLGRRVWLVG PCYLIATW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26151167107B-MYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6756422