PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00463.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 359aa    MW: 37888.1 Da    PI: 4.5721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00463.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.4e-161663148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT++Ed +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  Zmw_sc00463.1.g00170.1.am.mk 16 RGSWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                                  89******************************99************97 PP
2Myb_DNA-binding51.42.6e-1669114148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T++E+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  Zmw_sc00463.1.g00170.1.am.mk  69 RGNFTADEEETIIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.361163IPR017930Myb domain
SuperFamilySSF466891.65E-2913110IPR009057Homeodomain-like
SMARTSM007171.1E-121565IPR001005SANT/Myb domain
PfamPF002493.7E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231770IPR009057Homeodomain-like
CDDcd001671.56E-101863No hitNo description
PROSITE profilePS5129424.72164118IPR017930Myb domain
SMARTSM007173.9E-1468116IPR001005SANT/Myb domain
PfamPF002491.8E-1469114IPR001005SANT/Myb domain
CDDcd001675.84E-1171114No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2671118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTADEEETI IKLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKVAQ  120
REQKKEEGSE PISSSSASSS TTTANSSGDA GEQCGTSKEP DAADTIPPVE TDIDIYDMLV  180
DAFPAAAEPM PPSSPCSSST LTTCVVGVDD LIELPVIDIE PDIWSIIDGD GGADVPDVSG  240
ARHGDAAVPC TGAGVSTSGE AGEASDWWFA NLEKELGLWG PTEDSQAQGD TEGPGANLEM  300
GFAVALGDAE GDPQGAAATS GAAREQGQLL RLKCLRPATG DGRDGDAGRA VSSTVSTRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-27141182105C-Myb DNA-Binding Domain
1msf_C4e-27141182105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152187.11e-135myb-related protein Zm1
RefseqXP_004953532.11e-135myb-related protein Zm1
SwissprotP200241e-136MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A1E5VII11e-137A0A1E5VII1_9POAL; Myb-related protein Zm1
STRINGGRMZM5G833253_P011e-136(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]