PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00386.1.g00300.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 275aa    MW: 29944.9 Da    PI: 10.0403
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00386.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-122280148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48
                                  +g W++eEde+l + ++++G  tW+++a+  g           ++R++k+ ++rw++yl
  Zmw_sc00386.1.g00300.1.sm.mk 22 KGLWSPEEDERLFNQITLHGVSTWSSVAQLAGkkitslslvfgLRRSGKSFRLRWLNYL 80
                                  678******************************************************97 PP
2Myb_DNA-binding35.72e-1188141346
                                   SS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46 
                                   + ++ E+e ++ + + lG++           +W++Ia++m+ gRt++++k++w++
  Zmw_sc00386.1.g00300.1.sm.mk  88 PISKREEEVIISLQRPLGNRfrvtvltsmvrRWSAIAAKMP-GRTDNEIKNFWNS 141
                                   56889************************************.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.711784IPR017930Myb domain
SMARTSM007172.4E-72182IPR001005SANT/Myb domain
SuperFamilySSF466892.98E-1921139IPR009057Homeodomain-like
PfamPF002492.5E-102280IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-172387IPR009057Homeodomain-like
CDDcd001679.45E-72580No hitNo description
SMARTSM007172.1E-785145IPR001005SANT/Myb domain
PROSITE profilePS512949.76885147IPR017930Myb domain
PfamPF002496.4E-988141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1988147IPR009057Homeodomain-like
CDDcd001674.26E-788140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVRKPSHDDA GRPGTGENKE RKGLWSPEED ERLFNQITLH GVSTWSSVAQ LAGKKITSLS  60
LVFGLRRSGK SFRLRWLNYL RPGLKKEPIS KREEEVIISL QRPLGNRFRV TVLTSMVRRW  120
SAIAAKMPGR TDNEIKNFWN SRIRKRLNPA AKPGRARAAG NSAEEQVPAA ERTEESTDKA  180
GTAAAALAPL PIPARFPVFA CQLVDRSAGA ALTSTTITEQ QNSSSEASVG VDGSEDNARC  240
AAAAGDSNMI QGFLAFDELD YPADLLVDVP GVMDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-172214727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968332.14e-97transcription factor MYB57
SwissprotP200272e-39MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2T7DRN81e-97A0A2T7DRN8_9POAL; Uncharacterized protein
STRINGSi002595m2e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545