PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00369.1.g00370.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 269aa    MW: 28385.1 Da    PI: 8.1928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00369.1.g00370.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-184795148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W++eEde l  +v+q+G+g +W + +++ g++R++k+c++rw++yl
  Zmw_sc00369.1.g00370.1.am.mkhc 47 RGPWSPEEDEALRSYVQQHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 95
                                    89*********************************************97 PP
2Myb_DNA-binding45.41.8e-14102144246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+eEd  +v + +qlG++ W++Ia+ +  gRt++++k++w++
  Zmw_sc00369.1.g00370.1.am.mkhc 102 GGFTEEEDAVIVSLYAQLGSK-WSLIASQLE-GRTDNEVKNYWNT 144
                                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8654295IPR017930Myb domain
SuperFamilySSF466895.72E-2845142IPR009057Homeodomain-like
SMARTSM007171.0E-124697IPR001005SANT/Myb domain
PfamPF002492.0E-164795IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2548102IPR009057Homeodomain-like
CDDcd001673.65E-104995No hitNo description
PROSITE profilePS5129422.29796150IPR017930Myb domain
SMARTSM007174.8E-12100148IPR001005SANT/Myb domain
PfamPF002492.3E-12102144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-23103150IPR009057Homeodomain-like
CDDcd001672.28E-10104146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
PVLLSCPTPP LPAARRRAGY LGLGALVACR SVPMGRTPCC DRTAVKRGPW SPEEDEALRS  60
YVQQHGSGGN WIALPKKAGL KRCGKSCRLR WLNYLRPDIR HGGFTEEEDA VIVSLYAQLG  120
SKWSLIASQL EGRTDNEVKN YWNTKLKKRL AIAADAAALS PAPPAATHSP ATALFPSITI  180
PTVKTETYTC DDFLAPAAFR GATSLGSGGG STPASAASSA SNWSTDNDAT AGDGFLLDFC  240
AGNSDLGAAG QLELPGGYYY PLDPSLSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23471507108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968503.11e-113transcription factor RAX2
TrEMBLA0A3L6SQD01e-112A0A3L6SQD0_PANMI; Transcription factor RAX2-like
STRINGSi002629m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412