PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00203.1.g00330.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 163aa    MW: 18239 Da    PI: 10.0957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00203.1.g00330.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
  Zmw_sc00203.1.g00330.1.sm.mk 14 KGPWTAEEDQRLVTFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                                  79******************************99************97 PP
2Myb_DNA-binding57.14.1e-1870111447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    ++eE++  +d++++lG++ W++Ia++++ gRt++++k++w+++
  Zmw_sc00203.1.g00330.1.sm.mk  70 LSEEEEKTVIDLHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                                   69*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-19563IPR009057Homeodomain-like
PROSITE profilePS5129413.8961IPR017930Myb domain
SuperFamilySSF466891.05E-2711108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002494.0E-141461IPR001005SANT/Myb domain
CDDcd001672.57E-81661No hitNo description
PROSITE profilePS5129427.62562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2664116IPR009057Homeodomain-like
SMARTSM007173.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1670111IPR001005SANT/Myb domain
CDDcd001671.29E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQRLVTFLL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEEEEKTVID LHAELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHKPLQ PTPPPSSPPE QPPQQPKEEQ KAAVAGNGSG AGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802247.12e-92myb-related protein 315-like
RefseqXP_025802248.12e-92myb-related protein 315-like
RefseqXP_025802249.12e-92myb-related protein 315-like
RefseqXP_025802250.12e-92myb-related protein 315-like
RefseqXP_025802251.12e-92myb-related protein 315-like
RefseqXP_025802252.12e-92myb-related protein 315-like
RefseqXP_025802253.12e-92myb-related protein 315-like
RefseqXP_025802254.12e-92myb-related protein 315-like
RefseqXP_025802255.12e-92myb-related protein 315-like
RefseqXP_025802256.12e-92myb-related protein 315-like
RefseqXP_025802257.12e-92myb-related protein 315-like
RefseqXP_025802258.12e-92myb-related protein 315-like
RefseqXP_025802260.12e-92myb-related protein 315-like
RefseqXP_025802261.12e-92myb-related protein 315-like
RefseqXP_025802262.12e-92myb-related protein 315-like
RefseqXP_025802263.12e-92myb-related protein 315-like
SwissprotQ9C7U73e-87MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A3L6T6882e-92A0A3L6T688_PANMI; Protein ODORANT1-like
STRINGPavir.Ba02149.1.p7e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]