PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00197.1.g00250.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 406aa    MW: 45792.2 Da    PI: 7.8021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00197.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29e-09205253247
                                   SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                   + W+   d+l+ +a + + ++   +W+ +ar +g +++ ++++ ++qk+
  Zmw_sc00197.1.g00250.1.am.mk 205 QEWSRSQDKLFERALAVYDTDtpdRWHNVARFIGGTKSVEEVRRHYQKL 253
                                   78*********************************************97 PP
2Myb_DNA-binding31.34.8e-10319366347
                                   SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                    WT++ d+l+ +a + + ++   +W+ Iar +g g+t  ++ksr+q +
  Zmw_sc00197.1.g00250.1.am.mk 319 QWTKQQDKLFEQALAVYDKEtpdRWHNIARAVGGGKTVDEVKSRFQLL 366
                                   7*****************99*************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.262202258IPR017884SANT domain
SMARTSM007177.1E-10203256IPR001005SANT/Myb domain
PfamPF002496.6E-7205253IPR001005SANT/Myb domain
SuperFamilySSF466891.13E-10205261IPR009057Homeodomain-like
CDDcd001671.91E-6206253No hitNo description
PROSITE profilePS512937.747315370IPR017884SANT domain
SMARTSM007172.2E-9316369IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-12318375IPR009057Homeodomain-like
PfamPF002492.9E-7319365IPR001005SANT/Myb domain
CDDcd001675.43E-6320367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MPGDDSPFRH LRDLRKAVFH LMPQHGPPTL RRAASRFALD REEEQEPNSV PDVPGAFQLS  60
HSRAGRLSPL SSEDTDLSRA NFSADQSPSW PWHRSASTDG QEAASKPFQG IPICHISRPE  120
KEHSCTTSLV LFFYLLLTEL ATWPQPWRLY KSNSNEPDLS FKAPFPTNHP SHRHAHTSEE  180
DQSTLPVPHC PLIRNRTMAS NTKSQEWSRS QDKLFERALA VYDTDTPDRW HNVARFIGGT  240
KSVEEVRRHY QKLEEDVARI ESGGAPFHWY AAAAPPPART VQRGALNWTG WTTPAIKLEQ  300
ASAISLSIEM ASMSMRSSQW TKQQDKLFEQ ALAVYDKETP DRWHNIARAV GGGKTVDEVK  360
SRFQLLVHDV GRIENGEVAF PAYRCPGVGS TATAGYETDR MKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-18198406192RADIALIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UUT96e-77A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4706723