PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00175.1.g00440.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 249aa MW: 26322.6 Da PI: 8.5701

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00175.1.g00440.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v+++G+g +W + +++ g++R++k+c++rw++yl Zmw_sc00175.1.g00440.1.sm.mkhc 14 RGPWSPEEDEALRSYVQRHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	45.1	2.3e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +v + qlG++ W++Ia+ + gRt++++k++w++ Zmw_sc00175.1.g00440.1.sm.mkhc 69 GGFTEEEDAVIVSLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.509	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	3.1E-28	12	109	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-16	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	6.08E-10	16	62	No hit	No description
PROSITE profile	PS51294	22.421	63	117	IPR017930	Myb domain
SMART	SM00717	7.8E-12	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-12	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-23	70	117	IPR009057	Homeodomain-like
CDD	cd00167	3.13E-10	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGRTPCCDRT AVKRGPWSPE EDEALRSYVQ RHGSGGNWIA LPKKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTEEEDAVIV SLYSQLGSKW SLIASQLEGR TDNDVKNYWN TKLKKRLAAA 120 ALSVSTPSPP PLARPPVPTP AASHTSTSLF PSIAIPSVKT KTYTCDDFLA PAAFIRDTSL 180 ASGGGSTPPS AASSASTWST DNGAAAAAAA ADGFLLDFCG GSSTDLGASG QLELPGGYYY 240 PLDPSLSLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-24	14	117	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968503.1	1e-119	transcription factor RAX2
Swissprot	Q9SJL7	2e-67	RAX2_ARATH; Transcription factor RAX2
TrEMBL	A0A3L6SQD0	1e-118	A0A3L6SQD0_PANMI; Transcription factor RAX2-like
STRING	Si002629m	1e-118	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]