PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00136.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 424aa    MW: 45920.1 Da    PI: 9.1821
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00136.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.2e-19111158148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEde+l++++++ G g+W+t +r  g++R++k+c++rw +yl
  Zmw_sc00136.1.g00180.1.am.mk 111 KGPWTPEEDEKLLQYIQKNGHGSWRTLPRLAGLNRCGKSCRLRWTNYL 158
                                   79********************************************97 PP
2Myb_DNA-binding53.17.5e-17164209148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++++eE+  +++++  lG++ W++Ia +++ gRt++++k++w+++l
  Zmw_sc00136.1.g00180.1.am.mk 164 RGKFSQEEERTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 209
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-25102161IPR009057Homeodomain-like
PROSITE profilePS5129418.7106158IPR017930Myb domain
SuperFamilySSF466891.16E-31108205IPR009057Homeodomain-like
SMARTSM007173.4E-15110160IPR001005SANT/Myb domain
PfamPF002497.0E-17111158IPR001005SANT/Myb domain
CDDcd001679.42E-12113158No hitNo description
PROSITE profilePS5129426.603159213IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-27162214IPR009057Homeodomain-like
SMARTSM007171.2E-16163211IPR001005SANT/Myb domain
PfamPF002499.7E-16164209IPR001005SANT/Myb domain
CDDcd001672.68E-12166209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGAAGGFCLT TYARVVRSVR SSSGPVTVLP RAGRRQLREK AVQLDKNHAT LYLRRPRSIL  60
LRARTDKQTL IFLRRRPFPS AVATTCRASS RWGSLRQVTW PPCCDESGLK KGPWTPEEDE  120
KLLQYIQKNG HGSWRTLPRL AGLNRCGKSC RLRWTNYLRP DIKRGKFSQE EERTILHLHS  180
ILGNKWSAIA THLPGRTDNE IKNFWNTHLK KRLIQMGLDP MTHRPRTDFF AALPQLIALA  240
ALREQLGAAD HPAAGQMQPA GAGAAGVDVA IQAAKLQYLQ CLLQSAATTI ASTAGGRHAP  300
DAEETALGAV SSSLQGTPPG GSVPVSCTAA AQVSCTTTTT TYEEPLSSEF ANHGLISYDA  360
TDDMLACHGT GSLLPTLTDL SDATANPGDR CSATASSSFG DGGASSPLPW PEFFTDDPFI  420
TDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-301092135108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820029.11e-151transcription factor MYB93-like
TrEMBLA0A3L6PQU11e-152A0A3L6PQU1_PANMI; Myb-related protein Hv33-like
STRINGPavir.Fa00604.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132