PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00050.1.g00230.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 900aa    MW: 100472 Da    PI: 5.5708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00050.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16609656148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+WT+ Ed++lv +++++G g+W t +++ g++R++k+c++rw++yl
  Zmw_sc00050.1.g00230.1.am.mk 609 RGAWTAMEDDILVSYIRKHGEGRWGTLPSRAGLKRCGKSCRLRWLNYL 656
                                   89********************************************97 PP
2Myb_DNA-binding42.81.2e-13662730147
                                   TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ + +E+el+++++++lG++                       +W++Ia +++ gRt++++k++w++ 
  Zmw_sc00050.1.g00230.1.am.mk 662 RGNISNDEEELIIRLHRLLGNRrsricwqcsvssesslggdepviRWSLIAGRLP-GRTDNEIKNYWNTT 730
                                   78899**************************************************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF040911.4E-69247557IPR007225Exocyst complex subunit Sec15-like
Gene3DG3DSA:1.10.10.602.6E-21600659IPR009057Homeodomain-like
PROSITE profilePS5129421.651604660IPR017930Myb domain
SMARTSM007171.3E-13608658IPR001005SANT/Myb domain
PfamPF002492.2E-14609656IPR001005SANT/Myb domain
SuperFamilySSF466892.77E-20609660IPR009057Homeodomain-like
CDDcd001678.56E-10611656No hitNo description
Gene3DG3DSA:1.10.10.603.9E-19660734IPR009057Homeodomain-like
PROSITE profilePS5129410.562661735IPR017930Myb domain
SMARTSM007171.0E-11661733IPR001005SANT/Myb domain
PfamPF002495.7E-11662730IPR001005SANT/Myb domain
CDDcd001677.01E-8666731No hitNo description
SuperFamilySSF466892.77E-20703730IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006904Biological Processvesicle docking involved in exocytosis
GO:0000145Cellular Componentexocyst
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MTAQPKKRSA IVESGDGGLG VGIATFIANG EDLGPIIRHS FESGKPEALM HGLRSIVKKK  60
EVEIEELCRL HYEDFILAVD ELRGVLVDAE ELKSMLSGEN SHLQEVSTAQ LLKLDELYEL  120
YSVKKNVGEA VTTLKICVKV ISLYGLLSES QVETTWETAL ARVTSTLEEQ FSRMRVASHF  180
LAIKDYVTLL GATVRKYGYP ITQLIEVLEK SRDKYHQLLL LERRKQIDET LTNDSYEQMV  240
IKKEDDYNMN VTALGLEPDD AIPNFPYVAP FSSSVPDVCR IVRSFVEDSV NYLSYGGLMN  300
KHDVVRTYLD RLLIEVLNDS LLNMIYARSL AMSQMMQLAG NISVLEQTCG MFLLHSALLC  360
GIPKRNAERS HSTLTARAVL KASQNAVYNA LINLANFKVD EFMILLENVN WIAEEAPDNS  420
NDYMNEVMIY LETLISTAQE ILPLETLYKI ISGIMRHISD SIMSTLINEG VKRFTVNAVL  480
GLDIDLKMLE AFADEKFETT GLSISGKETS FRDCLVEIRQ LINLLLSSQP ENFMNPVIRQ  540
RNYGSLDYKK LAIICDKYKD AADGIFGSLS NRNAKQSARK RAYRPIKRRK AEAPEMGRKP  600
CCSKEGLNRG AWTAMEDDIL VSYIRKHGEG RWGTLPSRAG LKRCGKSCRL RWLNYLRPGI  660
KRGNISNDEE ELIIRLHRLL GNRRSRICWQ CSVSSESSLG GDEPVIRWSL IAGRLPGRTD  720
NEIKNYWNTT LGKKARRESS TRSKQQHQAN AARTSSGPAR TASGAAPDAT AIGWPSPEPN  780
TSPVRTKALR CTARLPVPPR AVAQASRGSP PEEVEAGDDH VRDAVEAAAP AAEEQQDCLP  840
EDDLSIDLDF DLGDLAFLSP WRDEAADGMV RPDDQFVGGE SDMEALLLGP AGDDLEFAWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2060773425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1583588RPIKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791845.10.0exocyst complex component SEC15A-like isoform X2
RefseqXP_025791846.10.0exocyst complex component SEC15A-like isoform X3
SwissprotQ9LXX61e-173SC15A_ARATH; Exocyst complex component SEC15A
TrEMBLA0A2S3IPT90.0A0A2S3IPT9_9POAL; Exocyst complex component
TrEMBLA0A2S3IPU70.0A0A2S3IPU7_9POAL; Exocyst complex component
TrEMBLA0A2T8I4J40.0A0A2T8I4J4_9POAL; Exocyst complex component
STRINGSi034321m0.0(Setaria italica)
Publications ? help Back to Top
  1. Hála M, et al.
    An exocyst complex functions in plant cell growth in Arabidopsis and tobacco.
    Plant Cell, 2008. 20(5): p. 1330-45
    [PMID:18492870]
  2. Chong YT, et al.
    Characterization of the Arabidopsis thaliana exocyst complex gene families by phylogenetic, expression profiling, and subcellular localization studies.
    New Phytol., 2010. 185(2): p. 401-19
    [PMID:19895414]
  3. Safavian D, et al.
    RNA Silencing of Exocyst Genes in the Stigma Impairs the Acceptance of Compatible Pollen in Arabidopsis.
    Plant Physiol., 2015. 169(4): p. 2526-38
    [PMID:26443677]