PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00034.1.g00530.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 370aa MW: 39086.1 Da PI: 6.9916

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00034.1.g00530.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	69	116	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zmw_sc00034.1.g00530.1.am.mk 69 KGPWTPEEDLMLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 116 79********************************************97 PP
2	Myb_DNA-binding	51	3.3e-16	122	167	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Zmw_sc00034.1.g00530.1.am.mk 122 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 167 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-24	60	119	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.935	64	120	IPR017930	Myb domain
SuperFamily	SSF46689	2.64E-30	66	163	IPR009057	Homeodomain-like
SMART	SM00717	7.5E-14	68	118	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	69	116	IPR001005	SANT/Myb domain
CDD	cd00167	1.33E-11	71	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-24	120	172	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.427	121	171	IPR017930	Myb domain
SMART	SM00717	4.3E-16	121	169	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-15	122	167	IPR001005	SANT/Myb domain
CDD	cd00167	1.83E-11	124	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDSLACRIRV ATPATALIVH SSVFLLSPSL VLLVKFITNH NERVAAGEEE EGGGGMGRPP 60 CCDKVGVKKG PWTPEEDLML VSYVQEHGPG NWRAVPTNTG LMRCSKSCRL RWTNYLRPGI 120 KRGNFTDQEE KLIVHLQALL GNRWAAIASY LPERTDNDIK NYWNTHLKKK LKKMEAEEAG 180 EGGEGVVPPE GAGAGGGVGG EKRPTVHKGQ WERRLQTDIH TARRALREAL SLDPSPPAKV 240 APLPTPAGSA TYASSAENIA RLLEGWLRPG SGGKGPEASG STSTTGTTPQ RPQCAGEGAA 300 SASASHSGGV AAAAVQTPEC STETSKMAGA AGAPPAFSML ENWLLDDGMG HGEVGLIDVV 360 PLGDPSEFFN

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDSLACRIRV ATPATALIVH SSVFLLSPSL VLLVKFITNH NERVAAGEEE EGGGGMGRPP  60
CCDKVGVKKG PWTPEEDLML VSYVQEHGPG NWRAVPTNTG LMRCSKSCRL RWTNYLRPGI  120
KRGNFTDQEE KLIVHLQALL GNRWAAIASY LPERTDNDIK NYWNTHLKKK LKKMEAEEAG  180
EGGEGVVPPE GAGAGGGVGG EKRPTVHKGQ WERRLQTDIH TARRALREAL SLDPSPPAKV  240
APLPTPAGSA TYASSAENIA RLLEGWLRPG SGGKGPEASG STSTTGTTPQ RPQCAGEGAA  300
SASASHSGGV AAAAVQTPEC STETSKMAGA AGAPPAFSML ENWLLDDGMG HGEVGLIDVV  360
PLGDPSEFFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-26	69	171	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-26	69	171	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008652703.1	1e-170	myb-related protein 306
Swissprot	P81392	1e-104	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A096QJ49	1e-168	A0A096QJ49_MAIZE; Transcription factor MYB30
TrEMBL	A0A3L6DZ53	1e-168	A0A3L6DZ53_MAIZE; Myb-related protein 306
STRING	GRMZM2G045748_P02	1e-169	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]