PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00034.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 293aa    MW: 32484.7 Da    PI: 5.4018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00034.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-151461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
  Zmw_sc00034.1.g00020.1.sm.mk 14 KGPWTAEEDQRLVTFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                                  79******************************99************97 PP
2Myb_DNA-binding55.81.1e-1770111447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    ++eE++  +d++++lG++ W++Ia++++ gRt++++k++w+++
  Zmw_sc00034.1.g00020.1.sm.mk  70 LSEEEEKTVIDLHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                                   69*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-19563IPR009057Homeodomain-like
PROSITE profilePS5129413.8961IPR017930Myb domain
SuperFamilySSF466894.49E-2711108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
CDDcd001679.43E-81661No hitNo description
PROSITE profilePS5129427.62562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2564116IPR009057Homeodomain-like
SMARTSM007173.0E-1666114IPR001005SANT/Myb domain
PfamPF002495.1E-1670111IPR001005SANT/Myb domain
CDDcd001673.40E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQRLVTFLL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEEEEKTVID LHAELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHKPLQ PTPPPPPPPE QPPQQPKEEQ KAAVAGNGSG AGLGSTETFS TDEVPMAHLL  180
NDIVLPGDDI LGTLPPAPST GISTANSPES CSSSSSTSFY SAAAAPASSG DSSIVDGEWP  240
EWPQMMEWPE SMWLDDVVTR LAPWEFEDPF VTYERIALFD HQETWNGSKH ELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802264.11e-144transcription factor MYB20-like
TrEMBLA0A2S3GZJ91e-143A0A2S3GZJ9_9POAL; Uncharacterized protein
STRINGPavir.Ba02149.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563