PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00031.1.g00410.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 356aa MW: 38077.9 Da PI: 10.2738

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00031.1.g00410.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.3e-19	18	63	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + Zmw_sc00031.1.g00410.1.sm.mk 18 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 63 79****************************.*********985 PP
2	Myb_DNA-binding	55.2	1.6e-17	72	114	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ Zmw_sc00031.1.g00410.1.sm.mk 72 PFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 114 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.597	13	68	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-32	15	111	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-17	17	66	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-18	18	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-26	19	71	IPR009057	Homeodomain-like
CDD	cd00167	5.53E-16	20	62	No hit	No description
SMART	SM00717	7.1E-15	69	117	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.809	70	119	IPR017930	Myb domain
CDD	cd00167	4.91E-12	72	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.1E-24	72	118	IPR009057	Homeodomain-like
Pfam	PF00249	9.7E-15	72	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MASPSCRGGS SKDVDRIKGP WSPEEDEALQ RLVARHGARN WSLISRSIPG RSGKSCRLRW 60 CNQLSPQVEH RPFTPEEDET ILRAHARFGN KWATIARLLS GRTDNAIKNH WNSTLKRKYY 120 ASASGAAAGG ASVDLAAVAP VDEEEMRRPL KRTSSDGHPG LSFSPGSPSG SDVSDSSHHS 180 LPSVMPSSSA APAPTSSQQQ QQQQQHVYRP VPRAGGVVVL PASMAPRPPS PPPPQQPPPQ 240 APATSLSLSL SPPGLDRPDP SPSLSPAAPP PAHVQQHPHP SAPSQMPQPA SLPFQLHPPA 300 PKPPAPAPFS SEFLSMMKEM IRIEVRNYMS GSGLEPRSGA DVHAATQRMM GMAKIE

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MASPSCRGGS SKDVDRIKGP WSPEEDEALQ RLVARHGARN WSLISRSIPG RSGKSCRLRW  60
CNQLSPQVEH RPFTPEEDET ILRAHARFGN KWATIARLLS GRTDNAIKNH WNSTLKRKYY  120
ASASGAAAGG ASVDLAAVAP VDEEEMRRPL KRTSSDGHPG LSFSPGSPSG SDVSDSSHHS  180
LPSVMPSSSA APAPTSSQQQ QQQQQHVYRP VPRAGGVVVL PASMAPRPPS PPPPQQPPPQ  240
APATSLSLSL SPPGLDRPDP SPSLSPAAPP PAHVQQHPHP SAPSQMPQPA SLPFQLHPPA  300
PKPPAPAPFS SEFLSMMKEM IRIEVRNYMS GSGLEPRSGA DVHAATQRMM GMAKIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-38	15	118	4	107	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151336.1	1e-142	sucrose responsive element binding protein
TrEMBL	B6TZ85	1e-140	B6TZ85_MAIZE; Sucrose responsive element binding protein
STRING	GRMZM2G050550_P01	1e-141	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154