PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma98g00520.1
Common NameZOSMA_98G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 342aa    MW: 39002.1 Da    PI: 7.0758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma98g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix1019.6e-32156240186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k ev+ Lie+r+e+e r+++  lk+plWeevs++m++ g+ r++k+Ckekwen+nk++kk k++ kkr +  s+tcpyf+ l+
  Zosma98g00520.1 156 RWPKAEVQGLIEVRSELEPRFQEPGLKGPLWEEVSSAMSAMGYPRNAKRCKEKWENINKYFKKAKDSTKKR-PHYSKTCPYFHLLD 240
                      8*********************************************************************8.99999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-23155242No hitNo description
CDDcd122031.86E-27155220No hitNo description
PROSITE profilePS500906.702155213IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDIIPASDNT STGEEASLNK EKRQRRRTTT ETKKTNKKKK QLRSIATFFE TMVKQFMDNQ  60
ETLHHRFLQV LEKRDEERIA IEEAWRHQEA TKYMKDAIER EDRQAVATAR ESVIVNFIEN  120
ITGESLNLPS KAREDSSNSN NSNGGRQRAG GIGTNRWPKA EVQGLIEVRS ELEPRFQEPG  180
LKGPLWEEVS SAMSAMGYPR NAKRCKEKWE NINKYFKKAK DSTKKRPHYS KTCPYFHLLD  240
QLYSKTSSSS AAAPNMDHRG NSELLDAIVV SNDQIKSHLF QHASKLNNSD DDHDLSAGTT  300
VPTTTCKQKY DDDEDNEKEE EEGESLSSAP TTKSQHFEQD R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KEKRQR
22439RRRTTTETKKTNKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941148.14e-84trihelix transcription factor GT-2
TrEMBLA0A0K9NJH20.0A0A0K9NJH2_ZOSMR; Uncharacterized protein
STRINGXP_008796930.11e-80(Phoenix dactylifera)
STRINGGSMUA_Achr1P24120_0011e-80(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.28e-50Trihelix family protein