PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma26g01400.1
Common NameZOSMA_26G01400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 698aa    MW: 79136.3 Da    PI: 6.762
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma26g01400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.62.7e-31517601186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k ev++Li++r+ +e+r+++  lk+plWeevs  m++ g++r++k+Ckekwen+nk+++k+ke++kkr s++s+tcpyf+ql+
  Zosma26g01400.1 517 RWPKAEVQDLIRVRSGLESRFQEPGLKGPLWEEVSMTMSSMGYRRNSKRCKEKWENINKYFRKTKESAKKR-SKQSNTCPYFHQLD 601
                      8*********************************************************************8.67778********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.969510574IPR017877Myb-like domain
CDDcd122032.30E-27516581No hitNo description
PfamPF138373.9E-21516603No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MQSGYGVSEM QQFAGDGIFP SPPVDVSQPQ KHHHHSIHPH PLSFFQHHQQ QQQQQEEYHP  60
RQLHFQEHHS PTPSFQPRFP PHFHQPVPIT HQLFHQTSHQ FQRFQHHLSL DNGDSRHADN  120
SASPSSSIGI DVRNRIGVAG AGTASGGNGG GRISAFLGPS MTFRLSVNEN ADELNNDDGV  180
LHGVEVDGSE TRWPLPSTSR GEVESSIKEP FWRPLDLEMD YINRNNKRCK EIHQEKQREN  240
EQEHEQGQEP EQDNMEIESS GGSKQFKEMK EVTNGDADSG ANTGSNYKLF SELEAICKSR  300
TTTAISLGKN NNNQTGSSSA LTGENLPITM GDPSLMDDDN PSNHVAPTSE DASTGDEAFT  360
GNGMKKVSDE RSKKRKRRRS KREKKKKKQL RSIAVFFESL VKQLIDHQEA LHMKFLRVLE  420
KREEARMTME KIWRHQDADK SRRQLKAREE QRAISEAREA TIVSFLEKMT GESINFSTER  480
FRSLMELKNQ SHGEAGEGED TEISNENNEN SRFNSNRWPK AEVQDLIRVR SGLESRFQEP  540
GLKGPLWEEV SMTMSSMGYR RNSKRCKEKW ENINKYFRKT KESAKKRSKQ SNTCPYFHQL  600
DQLYSKNKIN LKNDRPEQRC HSELLYSIVA SNDQPPPFNY SDMNPVPFAA SNNYTINTVD  660
DDLNVAAPTT EMPVSGHGGL LNNCCDGDGD VDGDKTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377KKRKRR
2372378KKRKRRR
3373378KRKRRR
4373381KRKRRRSKR
5373387KRKRRRSKREKKKKK
6374378RKRRR
7374379RKRRRS
8374381RKRRRSKR
9374387RKRRRSKREKKKKK
10374388RKRRRSKREKKKKKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PEI90.0A0A0K9PEI9_ZOSMR; Trihelix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-45Trihelix family protein