PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G434203_P01
Common NameEREB10
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 278aa    MW: 28693.7 Da    PI: 6.2326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G434203_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1592140356
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        y+G+r ++ +g+Wv+eIr+p+    + +r++lg++  ae+Aa+a++ a+++l+g+
  GRMZM2G434203_P01  92 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPMAEMAAAAYDVAARALRGA 140
                        9***9.55.6*********94....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-1791147IPR016177DNA-binding domain
PROSITE profilePS5103219.4891147IPR001471AP2/ERF domain
SMARTSM003802.2E-2491153IPR001471AP2/ERF domain
PRINTSPR003677.6E-692103IPR001471AP2/ERF domain
CDDcd000181.18E-1592147No hitNo description
Gene3DG3DSA:3.30.730.102.6E-2592147IPR001471AP2/ERF domain
PfamPF008471.2E-892139IPR001471AP2/ERF domain
PRINTSPR003677.6E-6129149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAEKQPPAPH SPSPAVQVQP AGPAAGGHSH HQAASASASG PASPHSPSPV VQQGDGTSSA  60
RAAAITAPPM ATTTATSSGE PSPRSSGKHA FYRGIRCRSG KWVSEIREPR KARRIWLGTY  120
PMAEMAAAAY DVAARALRGA DAVLNFPGAI ASRAAPASAS PEDIRAAAAA AAAAAQLEYS  180
HQGRTANPPP PPASPPSPAA AAAQDWHQQH DAAASYTPQQ EAGTDEFMDE EAIFEMPQLL  240
RNMAAGMMMS PPRLSPDTSD ESPDPSEAGE SLWSYRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12881471172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G434203
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G434203_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693721e-137AC169372.2 Sorghum bicolor clone SB_BBc0156J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646052.10.0ethylene-responsive transcription factor ERF027
SwissprotQ9FJ905e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1D6HFV80.0A0A1D6HFV8_MAIZE; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3L6ELI00.0A0A3L6ELI0_MAIZE; Ethylene-responsive transcription factor ERF025
STRINGGRMZM2G434203_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-27ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]