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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G322090_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | CPP | ||||||||
Protein Properties | Length: 587aa MW: 63520.8 Da PI: 6.2264 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.8 | 1.4e-15 | 458 | 498 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+CkkskClk+YCeCfaag++Cse C+C +C+N++++ GRMZM2G322090_P01 458 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCIGCQNNQSH 498 689**********************************9975 PP | |||||||
2 | TCR | 51.9 | 1.5e-16 | 543 | 582 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN GRMZM2G322090_P01 543 RHKRGCNCKKSSCLKKYCECFQGGVGCSVSCRCEGCKNAF 582 589***********************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.1E-18 | 457 | 498 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.044 | 458 | 583 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.3E-12 | 460 | 495 | IPR005172 | CRC domain |
SMART | SM01114 | 6.1E-17 | 543 | 584 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.2E-12 | 545 | 581 | IPR005172 | CRC domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MDTPDRPRAA AAAGFEDSPV FNFINNLSPI PPPKPLDSAH NVQLFKSSDL APVSSIFASP 60 HVNPVKETKV LIRDESVHLP QELHSPSSVR TRIDTSGSFR MIRCKDIVSD NCNITCQLNE 120 ASIDSSDHTS NSTGQLTQSI QDAAGSMESD KDQCDANKTD LTISQECTGL EGMNLDESGP 180 DKMDSSHSGI VVHENQLSEQ NNDEPAAYNE GYIITHQSTS DMLTLAIPSG TETQPVNDTQ 240 MADNPYSCES LLDDQSSGYC TQNSVHEPHL YWTGAVEGSA VSYTPQTLPG ALQSQLMPCN 300 KLSEPKDYVP TEQNALSQHL RGMRRRSLFN EKAGISNKGV DKTSDHHPVN STTPKCKTIS 360 GDNSKPLRTP PCALPGIGLH LNALATIPKE KIVPREIQST INESSNLIGP AGSSPAPFEQ 420 NIINDDFTQT TDVATAEASS QGSPKKKRHK FDNGDGTSCK RCSCKKSKCL KLYCECFAAG 480 VYCSEPCSCI GCQNNQSHME TVLSTRQQIE SRNPLAFAPK VIHTSEPGMD LGDFSNKTPA 540 SARHKRGCNC KKSSCLKKYC ECFQGGVGCS VSCRCEGCKN AFGKREG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 9e-16 | 462 | 580 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 9e-16 | 462 | 580 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.84999 | 0.0 | aerial organ| cell culture| ear| embryo| endosperm| meristem| pericarp| pollen| sheath| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G322090 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G322090_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972205 | 0.0 | EU972205.1 Zea mays clone 377413 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349342.1 | 0.0 | uncharacterized protein LOC100384542 | ||||
TrEMBL | A0A1D6KFU9 | 0.0 | A0A1D6KFU9_MAIZE; Protein tesmin/TSO1-like CXC 2 | ||||
STRING | GRMZM2G322090_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12746 | 26 | 30 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 6e-69 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G322090_P01 |