PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G314660_P02
Common NameZm.26981
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 725aa    MW: 76401.9 Da    PI: 7.2153
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G314660_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix636.6e-201691787
           trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                       m+ ++r+++lk+plW++vs+++++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  GRMZM2G314660_P02  1 MDAAFREAALKGPLWDQVSRRLEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 69
                       6889*************************************************97..66667******985 PP
2trihelix110.51e-34407492187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r+eme+r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  GRMZM2G314660_P02 407 RWPKAEVHALIQLRTEMETRYQDSGPKGPLWEDISSGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 492
                        8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.74E-15149No hitNo description
PfamPF138373.7E-14470No hitNo description
PROSITE profilePS500904.8091542IPR017877Myb-like domain
SMARTSM007176.0E-4404466IPR001005SANT/Myb domain
PROSITE profilePS500907.259406464IPR017877Myb-like domain
CDDcd122033.43E-31406471No hitNo description
Gene3DG3DSA:1.10.10.605.4E-4407463IPR009057Homeodomain-like
PfamPF138374.2E-24407493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MDAAFREAAL KGPLWDQVSR RLEAMGYKRS AKKCREKFEN VDKYYKRTKD GRAGRGDGKA  60
YRFFSELEAL HGAAPAVASL ARRPVAMAPA PPPPVTALVG ASTGMAPTAL HAEPPPMPQP  120
AAPAPTGTGT GTGTGSVTAT IAPPAGAAAS DAAAAAACMM TPGDVSFSSG SDGEDTDETG  180
GGSGKRKRDG GEDEDGFGGS ISSKMMRFFE GLMRQVMERQ EEMQRRFIEA IERREQDRMI  240
REEAWRRQEV ARLAREQDAL AQERAMAVSR DAAVVSFIQR VTGQNIPMPV PSPVAPPPAF  300
ITALTHAPPL QPTPVASAAP AAPAPAQAQH QPPPPAHQLS PKKPQTVMPL TPQAPQQPQV  360
QPRQAPSPSP SPATHPQGNK EIVVRAPPPA ESQDTAGFGG GAPSPSRWPK AEVHALIQLR  420
TEMETRYQDS GPKGPLWEDI SSGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPED  480
SKTCPYYHQL DALYRSKALA SSSSGPGAAP ALPPPPPPPQ RPDQQAAAAA PPVTVVLAPV  540
PLSQTGPHGN GNGNGNGCAG RGSSDNGGGG SGGMQKQQAS NGGVAAARFS AVDGAGGNGV  600
ATNKVIDRSS SVHEEGIVRK EEAVAAETRP QPVSMNDSYV DSDSSMDDDE EDDFYDDDDE  660
GDVGDGGNNK MQYEIQFQQQ HQHVQPQQQQ NQSGGGVRPN ASGSAGAGAG PAATTSGSFL  720
TMVHH
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G314660
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G314660_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9516590.0EU951659.1 Zea mays clone 988816 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400490.10.0trihelix transcription factor GTL1
TrEMBLA0A1D6JL370.0A0A1D6JL37_MAIZE; Trihelix transcription factor GT-2
STRINGGRMZM2G314660_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Representative plantOGRP6631573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-48Trihelix family protein