PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G172621_P01
Common NameLOC100216901
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 961aa    MW: 105382 Da    PI: 6.5075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G172621_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.5e-19364463198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  
  GRMZM2G172621_P01 364 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-P 453
                        99**************************555567778***************9989999999***9.********************887.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        +++lv+++++
  GRMZM2G172621_P01 454 GGKLVMGFRK 463
                        8878888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-31356473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-21361464IPR015300DNA-binding pseudobarrel domain
CDDcd100178.31E-24362463No hitNo description
PROSITE profilePS5086311.603364465IPR003340B3 DNA binding domain
PfamPF023623.8E-16364463IPR003340B3 DNA binding domain
SMARTSM010192.1E-22364464IPR003340B3 DNA binding domain
PROSITE profilePS5105014.391625675IPR011124Zinc finger, CW-type
PfamPF074963.0E-10630672IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MAMAAAAAAA TKRCMNPACG APASVLGAGG DWRKGWPLRS GCFALLCDKC GLAYEQFVFC  60
DIFHQKESGW RDCSFCGKRL HCGCVASKNS YDLLDSGGVH CVTCMKNSLA QSASGQVVPK  120
LFPSPINLRF FGKSDELLSS RNFEQPPSLT LDSRNDDIAF VNKSNHLFMV KGIEAGQSSN  180
ILRQKEIENG SRQIKWEQPT LSFGDMGRPF LTRSQSALES PQCTRRDDNK DPTTDSTSES  240
FSEACLSMSL GIANNVNRME ATSTAERPVL LSTTAIAEGR ELATTLSPFQ HAQRARHFLT  300
RPPRIGEGAA FDPTRDMFPH LRVARPPADG RGRNQLLPRY WPRITDQELQ QISGDSNSTI  360
VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP LTIQDARGKE WHFQFRFWPN  420
NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR IDPGGKLVMG FRKATNTVSL PDSQISAIAN  480
GSLLSETLFS TANENIGVVS GYPGFLHSIK GAADLHPNSL YDHHMNLVDG DVSWNKADKF  540
GSRPDEGSLQ FLQKRSHNIG SKSRRFLIDA EDAMELKLTW EEAQELLRPA PTAKPTVVMI  600
EDYEFEEYDE PPVFAKRSIF TIRATGEQDQ WIQCDDCSKW RRLPLNVIVA PKWTCTDNSW  660
DSKCCSCSAP EELTPRELQS VLQQYEEMRR RKGSYGLKLN VAEMDASSLD AFATAAVFGE  720
VGNQGSASVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHSP ACTCNVCMTV RRRFKTLMMR  780
KKQRQSEREE AEAGKKIAWV NRDEPEGSSL SRSPQTLDST RDNSDVTATM LDKVSDVNKQ  840
GHIDVDLNLH PAAPAVQAAQ QQPRPVSMMG LLEVAGRPLD NYMKQNGLTS LVGEQGGGSS  900
STATVPPPAL VESEERTSNE GLVPSASAER EPNAMAVDEA GENQQDKAAD DDDDAVAAAA  960
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-683424662126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1770781RRRFKTLMMRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.141020.0ear| embryo| endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G172621
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G172621_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629270.0BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds.
GenBankJX4285020.0JX428502.1 Zea mays subsp. mays clone pUT3100 ABI32 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346446.10.0uncharacterized protein LOC100216901
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1D6F4E90.0A0A1D6F4E9_MAIZE; B3 domain-containing transcription repressor VAL2
TrEMBLA0A3L6FWB90.0A0A3L6FWB9_MAIZE; Uncharacterized protein
STRINGGRMZM2G172621_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]