PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087787_P01
Common NameLOC103629990, Zm.1062
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-X1
Protein Properties Length: 1101aa    MW: 118897 Da    PI: 8.1781
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087787_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.58.7e-06369386118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H C+  CH+GpC++C
  GRMZM2G087787_P01 369 CGNHACKDMCHPGPCGEC 386
                        ****************** PP
2zf-NF-X119.52.2e-06427444118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG HkC+  CHeG+CppC
  GRMZM2G087787_P01 427 CGVHKCKVNCHEGECPPC 444
                        ****************** PP
3zf-NF-X117.96.8e-06522540119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H Cq lCH G CppC 
  GRMZM2G087787_P01 522 CGQHACQLLCHSGHCPPCL 540
                        ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.84E-6126197No hitNo description
PROSITE profilePS500899.052133191IPR001841Zinc finger, RING-type
PROSITE patternPS013590133190IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.023250268IPR000967Zinc finger, NF-X1-type
PfamPF014228.2252267IPR000967Zinc finger, NF-X1-type
CDDcd060081.05E-9295343No hitNo description
SMARTSM004380.01305324IPR000967Zinc finger, NF-X1-type
PfamPF014220.18307322IPR000967Zinc finger, NF-X1-type
CDDcd060082.80E-9359402No hitNo description
PfamPF014220.0011369386IPR000967Zinc finger, NF-X1-type
SMARTSM004387.0E-4369388IPR000967Zinc finger, NF-X1-type
CDDcd060082.56E-13417465No hitNo description
PfamPF014224.0E-5427444IPR000967Zinc finger, NF-X1-type
SMARTSM004382.4E-4427446IPR000967Zinc finger, NF-X1-type
PfamPF014224.7483494IPR000967Zinc finger, NF-X1-type
SMARTSM0043874483514IPR000967Zinc finger, NF-X1-type
CDDcd060082.82E-8512564No hitNo description
PfamPF014221.6E-4522539IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2E-4522541IPR000967Zinc finger, NF-X1-type
PfamPF0142248579595IPR000967Zinc finger, NF-X1-type
SMARTSM004380.35579597IPR000967Zinc finger, NF-X1-type
PfamPF014220.019632647IPR000967Zinc finger, NF-X1-type
SMARTSM004380.65632667IPR000967Zinc finger, NF-X1-type
CDDcd060081.32E-4665716No hitNo description
PfamPF014224.6669695IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16676697IPR000967Zinc finger, NF-X1-type
PfamPF014247.9E-5805870IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MQPSTDRRRG GGPVVTASHV WRPRPAASAP GSILPLPTSA SASASEARPP RRRPRRPNHG  60
NSHNHRPAAP QEQNDNAGHR RRGPPPESPT PAPPARFCDR APAPAAASTR GDGAVPQLVQ  120
EIQDKLSRGA VECMICYEMV RRSAAIWSCG SCFSIFHLPC IRKWVRYPAS AADASRAAEP  180
ASPSWRCPGC QFVYATPARE LTYSCFCGRR RDPPNDHFLT PHSCGEPCSK PLERAEPPGA  240
KGEDVDATRC PHVCVLQCHP GPCPPCKAFA PDRPCPCGKQ IIVRRCADRS TPVTCGRPCE  300
QMLPCKRHRC EKVCHTGSCG DCAVLISVRC FCRNKNETLL CGDLMEKGEL SEEDGVFSCN  360
EVCGRTLACG NHACKDMCHP GPCGECELMP WKVSTCHCGK TRLLERRASC LDTIPTCDKI  420
CDKKLPCGVH KCKVNCHEGE CPPCLVLVEQ KCRCGSSGQM VECHKFSMEE FRCKKPCGLK  480
KNCGRHRCSE ICCPLSRKVA HLEGGNWDPH LCQISCGKKL RCGQHACQLL CHSGHCPPCL  540
ETIFTDLTCA CGRTSLLPPL PCGTPTPSCP HQCSVPQPCG HPASHSCHFG DCPPCIVPVM  600
RECIGGHVML RNIPCGSKDI RCNQPCGKNR QCGIHACNRP CHPPPCDQTP ANGDASSSSG  660
GKAACGQVCG AARRECKHTC TAPCHPSSPC PDLRCEFAVT ITCSCGRITA TVPCGAGGSS  720
MGDNMFEVSI IQKLSMPLQS VESNGRVPLG QRKLCCDEEC AKMEKKRVLA EAFDITPPNL  780
DALHFGENSS SSDLVSDLFR REPKWVLAIE ERCKFLVLGK VRGSSSSNVK LHVFCPMMKD  840
KRDAIRQIAG RWKLSVQSAG WEPKRFVTIH ATPKSKPPAR ILGSKAGVPV TAAHPYFDPL  900
VDMDPRLVVA MLDLPRDAGV SALVLRFGGE CELVWLNDKN AIAVFNDPAR AATALRRLDY  960
GSAYQGAAMF MPSSAQASFS SNVWIGEQKD GGITARNNPW KKPASAAEPD PPSGDWTGVA  1020
GHAPAPGWRG VNTASQVMGT TNRWNVLESD AAASSGPGNE RKPAPRMDTA YSAIPNVGNA  1080
GPSMTKLQPD AEVDHWEEAC E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.137360.0endosperm| meristem| pedicel| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087787
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087787_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649308.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1D6LWY50.0A0A1D6LWY5_MAIZE; NF-X1-type zinc finger protein NFXL1
STRINGGRMZM2G087787_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1