PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G008356_P01
Common Nameuaz199
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 957aa    MW: 105244 Da    PI: 8.4169
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G008356_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18456555198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  
  GRMZM2G008356_P01 456 FEKMLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKVQDASGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-P 545
                        89**************************555566778***************9989999999***9.********************987.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++l +++++
  GRMZM2G008356_P01 546 EGKLIMGFRK 555
                        7777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-29452557IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-19453555IPR015300DNA-binding pseudobarrel domain
CDDcd100174.65E-22454555No hitNo description
PROSITE profilePS5086311.265456557IPR003340B3 DNA binding domain
PfamPF023621.5E-15456555IPR003340B3 DNA binding domain
SMARTSM010198.6E-21456556IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149711761IPR011124Zinc finger, CW-type
PfamPF074968.7E-10716758IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MSSPGPQQAP PAQPPPPQAA APPTAAPATV SATSISVQLP PIQPKPPPQP GPTSGPQPPT  60
PAQLLNLGPQ PPLYRGPICW NSYCKDPDPN SFGRRGWKVR SGPPYSVYAD LCGRCYSQFE  120
QGIYCETFHS EEGGWRNCES CGRRVHCGCI VSIHKYQLRD AGGVDCAKCA RSTRAAMAPP  180
SPVWTNPIHS SQNVSDRKDI TVKSWRPPAG QISSQWRQTN LWSVSSIQSD LQQRLAFEFD  240
RPSGSEKLLP GRTFIHSQER KFDDMHDRPA TPAGMNHIMR ERDPNGHGQT TNMDPAYSYT  300
LYHRDGSHPN NLHDSNHHCG ENDSLSSRKV AMPEASTSVD AGFKLDSHHT SNLKDDPPSL  360
SVGLASNFAP QNGPKDHIRI APTQQQSQMT SSSLQKQFYS HAVTGYNEFQ AQMRNGRPRM  420
DSKARSQLLP RYWPRITDQE LQHLSSDSNS VITPLFEKML SASDAGRIGR LVLPKKCAET  480
YFPPISQPEG LPLKVQDASG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF  540
SRIDPEGKLI MGFRKATNNS FEQEQATKPA NGALATSEAN GKVSAPDSSP NAAVSRQNKL  600
NTETKSSSPV EQATALKMDK DGLTQKEGPG TGSSSPGSVK RKTTILGQKN KRLRMDNEES  660
MELKITWEEA QELLRPPPKA PSIVIVDGHE FEEYEEPPVL GRKTYFVADK SGSNHQWAQC  720
EDCSKWRKLP IDALLPSKWT CSDNKWDPER CSCESAQEIS IEELAEFIPI KPAKKPKLKI  780
ESDAIDASDG LDTLANLAIL GEGEALPSQP TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT  840
CTCNVCMTVR RRFRTLMLRR EKKATKDLSR KKETGQSSEK ATQQAVSGPP GANATATRSA  900
QKADGNTDGP EDMAVDHKVT TSSPVKNHID LNIQPERDDE QSPKSGAAGL LSRDNAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-634345582126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.673160.0ear| embryo| endosperm| meristem| ovary| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G008356
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G008356_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548470.0BT054847.1 Zea mays full-length cDNA clone ZM_BFb0181D20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146199.10.0uncharacterized LOC100279769
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1D6IFM40.0A0A1D6IFM4_MAIZE; B3 domain-containing transcription factor VAL3
TrEMBLA0A3L6DYY60.0A0A3L6DYY6_MAIZE; B3 domain-containing protein
STRINGGRMZM2G008356_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-143HSI2-like 1