PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006578_P02
Common NameLOC100272950
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 356aa    MW: 40088.7 Da    PI: 8.1545
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006578_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.3e-115396141
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
             bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
                       e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  GRMZM2G006578_P02 53 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 96
                       6778999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-849101No hitNo description
SMARTSM003382.6E-753144IPR004827Basic-leucine zipper domain
PfamPF001702.1E-85496IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0825597IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.17E-75899No hitNo description
PROSITE patternPS0003606075IPR004827Basic-leucine zipper domain
PfamPF141441.8E-28153227IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEELAGSRRQ QEHLHLQHHQ PFAAAAEPAA PGMIKDVKPL AKKDHRRGTS TAERDPKTLR  60
RLAQNREAAR KSRLRKKAYI QQLESSRIRL AQLEQELHTA RAQGVFFPNS GILADQGVAG  120
KGVPIGGIDG LSSEAAMFDV EYGRWQEEHY RLMYELRAAL QQHLPEGELQ MYVESCLAHH  180
DEMVGIKEGA IKGDVFHLIS GVWRSPAERC FLWLGGFRPS EVIKMLLSHV EPLTEQQIVG  240
VYGLQQSALE TEEALSQGLE ALYQSLSDTV VSDALSCPSN VSNYMGQMAV AMNKLSTLEG  300
FVRQAENLRQ QTLHRLHQVL TTRQMARSLL AVSDYFHRLR TLSSLWVTRP RAPQEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.275920.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006578
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006578_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398520.0BT039852.1 Zea mays full-length cDNA clone ZM_BFc0047C02 mRNA, complete cds.
GenBankBT0434360.0BT043436.2 Zea mays full-length cDNA clone ZM_BFc0188L07 mRNA, complete cds.
GenBankBT0638980.0BT063898.1 Zea mays full-length cDNA clone ZM_BFc0118B03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140874.10.0uncharacterized protein LOC100272950
RefseqXP_008651077.10.0putative bZIP transcription factor superfamily protein isoform X1
SwissprotQ52MZ21e-151TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1D6I6Z40.0A0A1D6I6Z4_MAIZE; BZIP transcription factor family protein
TrEMBLB4FRW40.0B4FRW4_MAIZE; BZIP transcription factor
TrEMBLB4G2480.0B4G248_MAIZE; BZIP transcription factor family protein
STRINGGRMZM2G006578_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.11e-140bZIP family protein