PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015896060.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Nin-like

Protein Properties

Length: 1009aa MW: 110927 Da PI: 5.0552

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015896060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	591	641	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_015896060.1 591 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGIPRWPSRKINKV 641 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.087	580	661	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-26	594	641	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-23	906	1001	No hit	No description
SMART	SM00666	3.0E-26	915	997	IPR000270	PB1 domain
PROSITE profile	PS51745	23.573	915	997	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.8E-26	915	996	No hit	No description
CDD	cd06407	4.63E-36	916	996	No hit	No description
Pfam	PF00564	4.9E-19	916	996	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence Send to blast
MSESEEETPS FPPKSKDVVD DVREAALMDF DLEIASPWPL DQIAFVSNPM SPLTFSSTEQ 60 PYSPLWAFCD GDNDEKLAGN VNSPIADCPR MISCDSNSVT ETPAEKMNED KRVWISPLLG 120 PAPIENLDGY CLIKEKMNQA LRYLKDSTDQ HILAQVWAPV KNGCQYVLAT SGQPFVLDPH 180 SNGLHQYRMV SLMYMFSVDG DSEGALGLPG RVFRQKLPEW TPNVQYYSIR EYPRLGHAQH 240 YNVQGTLAVP VFEPSGQACV GVLELIMTSP KINYAPEVDK VCKALEAVNL KSSEILDHTG 300 TQICNEGRQN ALTEILEILT VVCETHKLPM AQTWVPCMHR NVLTYGGGLK KSCTSFDGSC 360 MGQVCMSITD VAFYIIDSSM WRFREACLEH HLQKGQGVAG RAFLTHNLCF CADITQFCKI 420 EYPLVHYARM FGLTSCFAIC LRSTHTGDDD YILEFFLPPS ISDSSQQQIF LGSLLATMKK 480 HFQSLRVASG VGFDEEVFVE IIQASSSEGL DSRLECIQVS QSPESSPGPN ILSNVGDIVQ 540 PDSSPHQLIE DFCAANDRST AAQDGRSHSH VSLRESKDTK KTSERKRGKT EKSISLEVLQ 600 QYFAGSLKDA AKSLGVCPTT MKRICRQHGI PRWPSRKINK VNRSLSKLKR VIESVQGAEG 660 AFGLTPLSSS PLPVSVASVS QPFMLNGTNS PSPKACEPLT EKKKQQTSFS LGREGLAGME 720 EPLLGGVLRP EELIHENIRF LPEIGRGLNQ SKSGSSSREA SAGTPTSHGS CQGSPANGSA 780 AEKDYLASCQ DSPANGTTII KDPISSIHEQ CVKVDVSPES ALQPTDELLK FPVACSIDAL 840 VTTESQEPFG RMLIEDAGSS KDLRNLCPTA DAILDEQVPE FCWVNPQCLD LATKLPMGTL 900 APTTSHLKPR QEMKSVTIKA TYREDIIRFR ITLGSGIVEL KEEVAKRLKL EVGTFDIKYM 960 DDDHEWVLIA CDADLQECMD ICISSGSNMI RLLVHDIMPN LGSSCESTE

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence Send to blast

MSESEEETPS FPPKSKDVVD DVREAALMDF DLEIASPWPL DQIAFVSNPM SPLTFSSTEQ  60
PYSPLWAFCD GDNDEKLAGN VNSPIADCPR MISCDSNSVT ETPAEKMNED KRVWISPLLG  120
PAPIENLDGY CLIKEKMNQA LRYLKDSTDQ HILAQVWAPV KNGCQYVLAT SGQPFVLDPH  180
SNGLHQYRMV SLMYMFSVDG DSEGALGLPG RVFRQKLPEW TPNVQYYSIR EYPRLGHAQH  240
YNVQGTLAVP VFEPSGQACV GVLELIMTSP KINYAPEVDK VCKALEAVNL KSSEILDHTG  300
TQICNEGRQN ALTEILEILT VVCETHKLPM AQTWVPCMHR NVLTYGGGLK KSCTSFDGSC  360
MGQVCMSITD VAFYIIDSSM WRFREACLEH HLQKGQGVAG RAFLTHNLCF CADITQFCKI  420
EYPLVHYARM FGLTSCFAIC LRSTHTGDDD YILEFFLPPS ISDSSQQQIF LGSLLATMKK  480
HFQSLRVASG VGFDEEVFVE IIQASSSEGL DSRLECIQVS QSPESSPGPN ILSNVGDIVQ  540
PDSSPHQLIE DFCAANDRST AAQDGRSHSH VSLRESKDTK KTSERKRGKT EKSISLEVLQ  600
QYFAGSLKDA AKSLGVCPTT MKRICRQHGI PRWPSRKINK VNRSLSKLKR VIESVQGAEG  660
AFGLTPLSSS PLPVSVASVS QPFMLNGTNS PSPKACEPLT EKKKQQTSFS LGREGLAGME  720
EPLLGGVLRP EELIHENIRF LPEIGRGLNQ SKSGSSSREA SAGTPTSHGS CQGSPANGSA  780
AEKDYLASCQ DSPANGTTII KDPISSIHEQ CVKVDVSPES ALQPTDELLK FPVACSIDAL  840
VTTESQEPFG RMLIEDAGSS KDLRNLCPTA DAILDEQVPE FCWVNPQCLD LATKLPMGTL  900
APTTSHLKPR QEMKSVTIKA TYREDIIRFR ITLGSGIVEL KEEVAKRLKL EVGTFDIKYM  960
DDDHEWVLIA CDADLQECMD ICISSGSNMI RLLVHDIMPN LGSSCESTE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015896060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015896060.1	0.0	protein NLP7 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	W9SKU2	0.0	W9SKU2_9ROSA; Protein NLP7
STRING	XP_010107269.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]