PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882736.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WOX
Protein Properties Length: 380aa    MW: 43145.3 Da    PI: 8.3998
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.77.1e-2284143357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Le+l+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  XP_015882736.1  84 SRWNPTPEQLRALEDLYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 143
                     7*****************99**************************************97 PP
2Wus_type_Homeobox114.84.2e-3783145365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Le+ly++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_015882736.1  83 SSRWNPTPEQLRALEDLYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 145
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-581148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-984143IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1284150IPR009057Homeodomain-like
PfamPF000461.6E-1984143IPR001356Homeobox domain
CDDcd000862.89E-685145No hitNo description
PROSITE profilePS5007111.12789144IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MWMMGYNEGG DFNMPDSFNG RKLRPLIPRP VCSSTTNTTT ASNPAPPCLS RIHGSDFFAQ  60
YHHLASMAEQ NKREFNTPQI VVSSRWNPTP EQLRALEDLY RRGTRTPSAE QIQHITAQLR  120
RYGKIEGKNV FYWFQNHKAR ERQKRRRQME STTAPQPSDE LEMSDKKELG ASRTVFEVEQ  180
TKNWAPSTNC SILTEESVSI QRTAKATVAE CRTDGWIQFG EGELQQRKNF VQRNATWQMM  240
QLSCPPLSSS CHNHLINTHT TTTSTTTNGA IATTPPTLTT LRTADQKLIK TTDQDLSIFI  300
APPYRQNGRL YHDQVNSHVA GDREQDCCGE SQTLQLFPLR SGNGNEILGE KETEISVSAM  360
NGRFSTSTPF QFFEFLPLKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024929159.10.0WUSCHEL-related homeobox 1-like
TrEMBLA0A2N9FQ711e-176A0A2N9FQ71_FAGSY; Uncharacterized protein
STRINGXP_008240291.11e-157(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-60WUSCHEL related homeobox 1