PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878713.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 582aa    MW: 65100.1 Da    PI: 4.9998
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.4e-53141401127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi+e+d++k+ePwdLp  + +k+++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++
  XP_015878713.1  14 LPLGFRFRPTDEELVDYYLRSKINGDEKQV-TVIREIDVCKWEPWDLPdlSVIKTNDPEWFFFCPQDRKYPNGHRLNRATTAGYWKATGKDRKIK 107
                     699************************999.99**************96447888889************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                     s +++l+g+kktLvfy+grapkg++t+Wvmheyr
  XP_015878713.1 108 S-GTTLIGMKKTLVFYTGRAPKGKRTSWVMHEYR 140
                     *.999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-619164IPR003441NAC domain
PROSITE profilePS5100556.57814164IPR003441NAC domain
PfamPF023658.4E-2815140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MAVDELAVLS LNSLPLGFRF RPTDEELVDY YLRSKINGDE KQVTVIREID VCKWEPWDLP  60
DLSVIKTNDP EWFFFCPQDR KYPNGHRLNR ATTAGYWKAT GKDRKIKSGT TLIGMKKTLV  120
FYTGRAPKGK RTSWVMHEYR PTLKELDGTN PGQNAFVLCR LFKKQDDTIS NCDEAEIIVP  180
SPAKSSPEDP QSELVVPPAS PSGRQAENSD GTASDVVVSH EYGCDAEDQA TEEADAEHVD  240
LQLQQDLENM FYDPPLGQLD CKIFSPLHSQ MQAELGYCPV VNDSNSGKTG VQFPYGTNES  300
DEISKFLDSI LNVPEDCDNG QLNMGEIGIK AEAKAECGVA KGMFDHEYQD SWGFINKRAP  360
TSMETLEDYA GVTSSLPKAS AASGNQLNDD NVTGITRRIR QWPNPPSNEN SVFRQGEAPR  420
RIRFQCKLQV GSVSCGPMAR DHRIRKPEEE LKPAVKEEEK ASEQHANGMD EPEKLSLFSK  480
CRVGNSETPQ EQEEKASEQH ASGMNEPEKL SLFSKCRVGN SETSQELVTT IRPSWMSKAG  540
KKVYSALWKA PAGYSIWLFM FRVVGCVVLF TVSASLWRCL KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4511654166NO APICAL MERISTEM PROTEIN
1ut4_B2e-4511654166NO APICAL MERISTEM PROTEIN
1ut7_A2e-4511654166NO APICAL MERISTEM PROTEIN
1ut7_B2e-4511654166NO APICAL MERISTEM PROTEIN
4dul_A2e-4511654166NAC domain-containing protein 19
4dul_B2e-4511654166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878713.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878713.10.0NAC domain-containing protein 91-like isoform X1
TrEMBLA0A2P5DF841e-177A0A2P5DF84_PARAD; NAC domain containing protein
STRINGXP_010103069.11e-174(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-102TCV-interacting protein