PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871803.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 309aa    MW: 34014.3 Da    PI: 10.5195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20164213255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++++g
  XP_015871803.1 164 NYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRMRG 213
                     59*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.36E-17163222No hitNo description
Gene3DG3DSA:3.30.730.101.0E-29164221IPR001471AP2/ERF domain
SMARTSM003809.3E-34164227IPR001471AP2/ERF domain
PfamPF008471.8E-14164213IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21164221IPR016177DNA-binding domain
PROSITE profilePS5103222.761164221IPR001471AP2/ERF domain
PRINTSPR003671.3E-10165176IPR001471AP2/ERF domain
PRINTSPR003671.3E-10187203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLNSRKTLET VPFYQKPETF HVSETFRFLS ETPSFYGSYL GTHLAISVPN QLMLQNPPTP  60
SHLVHDSNSI SATKFSPCGA HHAEPEKAPE TESPPPPVLD GIAAVVGQHV LFGGKQINQS  120
VSDAAKAQIP DFVSVSVSQR LSNENAKLPS EKKSTRNNIS VQKNYRGVRK RPWGRWSAEI  180
RDRIGRCRHW LGTFDTAEEA ARAYDAAARR MRGSKARTNF EIPSVLPLSS PLSSSSFDAK  240
KSSTGGKAAK AAHNNNNNKK KCSVVTSVAH LFSASPVINQ HHHHRQNGIH GNVELDLKLS  300
VTNRNEPKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-18163222161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871803.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871803.20.0ethylene-responsive transcription factor ERF084
TrEMBLM5WY965e-88M5WY96_PRUPE; Uncharacterized protein
STRINGEMJ187678e-89(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.17e-25ERF family protein