PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871461.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 289aa    MW: 31946.6 Da    PI: 7.8314
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_015871461.1  7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41
                    ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12545No hitNo description
CDDcd002029.41E-17654No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.4E-13741IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.0E-14741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFEEH  60
RVSKVKSISI NKNKEVKLLK RKQNHDGVVI GGVTTDYNQG FRKVIDEDAS NRSSSGSAIS  120
NSESCAQFGS ADASDLTGPA QSMVWDTMVP SRKRTCVNRP KPSSVEKLTK DLYTILHEQQ  180
SSYFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPSSITR EEESEASSLS VDNKHYINEV  240
YSHSASIHTN NKGANLTGPG IEKIKYPAGQ GMQQEQLRRQ YSCLFSFLF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871467.20.0GATA transcription factor 26-like
SwissprotQ8W4H11e-101GAT26_ARATH; GATA transcription factor 26
TrEMBLA9PFA91e-159A9PFA9_POPTR; Uncharacterized protein
TrEMBLB9N2W61e-159B9N2W6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.37e-93GATA transcription factor 26