PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870165.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 540aa    MW: 59819.8 Da    PI: 6.5987
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.5e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_015870165.1  7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41
                    ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-11545No hitNo description
CDDcd002026.87E-17654No hitNo description
PfamPF003206.9E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139195.4E-9281374IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFEEH  60
RVSKVKSISI NKNKEVKLLK RKQNHDGVVI GGVTTDYNQG FRKVIDEDAS NRSSSGSAIS  120
NSESCAQFGS ADASDLTGPA QSMVWDTMVP SRKRTCVNRP KPSSVEKLTK DLYTILHEQQ  180
SSYFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPSSITR EEESEASSLS VDNKHYINEV  240
YSHSASIHTN NKGANLTGPG IEKIKYPAGQ GMQQEQLRRD KSQHEYLQIL GNHSSPICNI  300
DLNDILNFEE FTRHLTDEEQ QQLLTYLSPV DTVKFPDSLK SLFDSPQFNE NLTSFQQLLA  360
EGVFDISFSG AKAEDCKTLK RLALSSLSKS KWVERYHLLK NYKTSCGGPV ACGPNATVSS  420
NIINVKRLRD SQNQNFPEVK IMMKSPKRVI MKNSYENKEV VDNDGSCFSP RSLFALPTDG  480
SSFLLDSINF VEESSDQDLL LDVPSHGSFA QAELLHPATS FGSQQASTSS SSIYPHLVHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870165.10.0GATA transcription factor 26
SwissprotQ8W4H11e-166GAT26_ARATH; GATA transcription factor 26
TrEMBLW9SE930.0W9SE93_9ROSA; GATA transcription factor 26
STRINGXP_010104842.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-150GATA transcription factor 26