PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g07680.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 247aa MW: 25817.7 Da PI: 9.1477

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g07680.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.8	2e-16	63	111	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p r +r++lg+f tae+Aa a++ a+++l+g Zjn_sc00004.1.g07680.1.am.mk 63 FYRGIR--SRSGKWVSEIREP-----RkvRRIWLGTFPTAEMAAVAYDVAARALRG 111 69*6..678*****8.....337***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.1E-28	63	125	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.323	63	119	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.36E-18	63	120	IPR016177	DNA-binding domain
Pfam	PF00847	4.7E-8	64	111	IPR001471	AP2/ERF domain
CDD	cd00018	3.84E-26	64	121	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.2E-27	64	120	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAFLTLSARC AASLYSRGPP RAFPSNLHAR AATATAHPCK RTDSDDAHGG GPSSPRSTGK 60 HPFYRGIRSR SGKWVSEIRE PRKVRRIWLG TFPTAEMAAV AYDVAARALR GPDAALNFPD 120 LAAARPAPAS TSADDIRAAA SEAAASLEQP PRRVPAAGRG IAPAAAATGP QQHGGSSAAA 180 AVAQPEGGSS APNPYFLDEE ALFETPQFLR NMAAGMMMSP PRISPNSSDD SPDPSEAGES 240 LWSYRDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-13	60	119	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00558	DAP	Transfer from AT5G52020	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU955751	2e-96	EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318413.1	1e-95	ethylene-responsive transcription factor ERF027
Swissprot	Q9FJ90	3e-45	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A0A9B4N5	3e-99	A0A0A9B4N5_ARUDO; Uncharacterized protein
STRING	Pavir.Gb00885.1.p	2e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3654	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	3e-19	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]