PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033792001 | ||||||||
Common Name | VIT_08s0007g03820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Trihelix | ||||||||
Protein Properties | Length: 562aa MW: 64145.5 Da PI: 7.0634 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.7 | 8.8e-30 | 115 | 200 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea GSVIVT01033792001 115 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 200 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 72.6 | 6.9e-23 | 410 | 490 | 2 | 82 |
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 W+++e+ L+++r++me+r+++ g++++ lWe+++ km+ g+ rs+++Ck+kw+++n++ ++ke +kkr +e+s++c yf GSVIVT01033792001 410 WPESEITRLMQLRTNMESRFQQaGSSEEVLWEDIAGKMACLGYDRSAIMCKDKWNSINNYLLRTKECNKKR-KENSRSCTYF 490 *********************7589*********************************************8.788889***9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.131 | 108 | 173 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.31 | 112 | 175 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.66E-20 | 115 | 180 | No hit | No description |
Pfam | PF13837 | 1.4E-20 | 115 | 201 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 402 | 466 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.934 | 402 | 467 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.35 | 406 | 469 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.0E-14 | 408 | 490 | No hit | No description |
CDD | cd12203 | 2.93E-23 | 410 | 474 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MAMEDHHHYG MADLRQFMNT RPHFPPIPHH PDLFPAHHHH RTLTPAQPYD LMMVGRQVTH 60 DMMSRGLHDF VTDSAAPPPT TTATNTNTVV PTSNATLTGL DADAACLGGD ASTGRWPRQE 120 TLTLLEIRSR LDSKFKEANQ KGPLWDEVSR IMSEEHGYQR SGKKCREKFE NLYKYYKKTK 180 EGKAGRQDGK HYRFFRQLEA LYGDTSNAVS VPENHLAGSS LTFHTATNLN IATQNQEIFQ 240 TPKLCDSLSL SNSSDFDTSS SEDDDHNNTG PTENGSTDKK NRRSRRSWKV KIKDFIDSQM 300 RKLMEKQEAW LEKMLKALEH KEQERILREE EWRKQEAARL DREHKFWATQ RAWIEARDAA 360 LMDTLQKLTG RELKVPSPEE LMATQHRNPG ERQNENGSET VSNSVKGDSW PESEITRLMQ 420 LRTNMESRFQ QAGSSEEVLW EDIAGKMACL GYDRSAIMCK DKWNSINNYL LRTKECNKKR 480 KENSRSCTYF LSNETLYNQG GAYCEISEPG PEMARLQPNE GSPPSNSNAG SAVPDSCFRF 540 LMADGNLWEN YALKLNKGDN Q* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.29619 | 0.0 | inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. | |||||
Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM442910 | 0.0 | AM442910.2 Vitis vinifera contig VV78X232607.28, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277307.2 | 0.0 | PREDICTED: trihelix transcription factor PTL | ||||
Swissprot | Q9LZS0 | 1e-151 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | F6HKI2 | 0.0 | F6HKI2_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g03820.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8402 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-146 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033792001 |
Publications ? help Back to Top | |||
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