PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032781001 | ||||||||
Common Name | VIT_13s0067g01440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Trihelix | ||||||||
Protein Properties | Length: 528aa MW: 59276.7 Da PI: 9.0139 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.1 | 1.1e-13 | 325 | 408 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf.er.spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea ++ +++rg+l++++W+e++ ++ r++g +r + +qCk++++ l+k+yk +k+ s++p++ +l+ GSVIVT01032781001 325 CWSDVATETLIEAWGDRYVKFNRGNLRQKDWKEIAGAVnsRHGGAiRRkTDVQCKNRIDTLKKKYKLEKAKPTP------SKWPFYYRLN 408 7*************************************9755554444599****************9998885......5799998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51375 | 5.689 | 36 | 70 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.484 | 104 | 138 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.001 | 107 | 139 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.068 | 107 | 134 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 6.8E-10 | 139 | 186 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.479 | 139 | 173 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.1E-5 | 142 | 175 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.786 | 174 | 208 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.5E-4 | 177 | 209 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF12854 | 1.8E-6 | 205 | 237 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.885 | 209 | 243 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.6E-4 | 212 | 241 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13837 | 3.7E-24 | 323 | 410 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MSILRKLARK NPNSPFLLCN TSRFFNTQNP NPYEPTVAYY DNLINTAGRN RDFASVCNLL 60 NKRVRDGCFN TNHTFDFITN TDAGLSVLDE LSQALAHLDK GFLRKSAYDS LIARLCRLKR 120 VDESLRLVDT MVQSDHGVNA CTFHPILNVL TRKRKMEEAW RVMTIMRESG VSPDVTAYNY 180 LLTAYCFTGN LEAAVGVLTE MEEEGMAADA RTYDALVLGA CKAGKVEGAM VVLRRMEDDG 240 VPILYSTHAH VINGLLKLGY YAQAVEFVMI CGGKDKKLDE ESFGILGSRL INLKRTMENQ 300 RAPSAPRSLR PRHGGGSGGG GREDCWSDVA TETLIEAWGD RYVKFNRGNL RQKDWKEIAG 360 AVNSRHGGAI RRKTDVQCKN RIDTLKKKYK LEKAKPTPSK WPFYYRLNSL IGTNALTLTS 420 KLNSGGSIEG SFSGDEDDEL GFDGSLRKLP MDSADFSGEA ACRELARSIL KFGEIYERIE 480 SSKQQQIMEL EKQRMELTKD VELQRMNMYM EAQLELQRMK RTAGKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5i9g_C | 6e-26 | 23 | 268 | 16 | 443 | pentatricopeptide repeat protein dPPR-U8C2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 155 | TRKRKM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.30235 | 0.0 | bud |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM424613 | 0.0 | AM424613.2 Vitis vinifera contig VV78X159476.15, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010658251.1 | 0.0 | PREDICTED: pentatricopeptide repeat-containing protein At3g56030-like | ||||
Swissprot | Q9LY43 | 1e-104 | PP283_ARATH; Pentatricopeptide repeat-containing protein At3g56030, mitochondrial | ||||
TrEMBL | D7T4L8 | 0.0 | D7T4L8_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0067g01440.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.2 | 5e-63 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032781001 |
Publications ? help Back to Top | |||
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