PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032781001
Common NameVIT_13s0067g01440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 528aa    MW: 59276.7 Da    PI: 9.0139
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032781001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-13325408186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf.er.spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++  + +Liea  ++  +++rg+l++++W+e++ ++  r++g  +r + +qCk++++ l+k+yk +k+          s++p++ +l+
  GSVIVT01032781001 325 CWSDVATETLIEAWGDRYVKFNRGNLRQKDWKEIAGAVnsRHGGAiRRkTDVQCKNRIDTLKKKYKLEKAKPTP------SKWPFYYRLN 408
                        7*************************************9755554444599****************9998885......5799998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.6893670IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.484104138IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001107139IPR002885Pentatricopeptide repeat
PfamPF015350.068107134IPR002885Pentatricopeptide repeat
PfamPF130416.8E-10139186IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.479139173IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-5142175IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.786174208IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.5E-4177209IPR002885Pentatricopeptide repeat
PfamPF128541.8E-6205237IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.885209243IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-4212241IPR002885Pentatricopeptide repeat
PfamPF138373.7E-24323410No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MSILRKLARK NPNSPFLLCN TSRFFNTQNP NPYEPTVAYY DNLINTAGRN RDFASVCNLL  60
NKRVRDGCFN TNHTFDFITN TDAGLSVLDE LSQALAHLDK GFLRKSAYDS LIARLCRLKR  120
VDESLRLVDT MVQSDHGVNA CTFHPILNVL TRKRKMEEAW RVMTIMRESG VSPDVTAYNY  180
LLTAYCFTGN LEAAVGVLTE MEEEGMAADA RTYDALVLGA CKAGKVEGAM VVLRRMEDDG  240
VPILYSTHAH VINGLLKLGY YAQAVEFVMI CGGKDKKLDE ESFGILGSRL INLKRTMENQ  300
RAPSAPRSLR PRHGGGSGGG GREDCWSDVA TETLIEAWGD RYVKFNRGNL RQKDWKEIAG  360
AVNSRHGGAI RRKTDVQCKN RIDTLKKKYK LEKAKPTPSK WPFYYRLNSL IGTNALTLTS  420
KLNSGGSIEG SFSGDEDDEL GFDGSLRKLP MDSADFSGEA ACRELARSIL KFGEIYERIE  480
SSKQQQIMEL EKQRMELTKD VELQRMNMYM EAQLELQRMK RTAGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9g_C6e-262326816443pentatricopeptide repeat protein dPPR-U8C2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155TRKRKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.302350.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4246130.0AM424613.2 Vitis vinifera contig VV78X159476.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658251.10.0PREDICTED: pentatricopeptide repeat-containing protein At3g56030-like
SwissprotQ9LY431e-104PP283_ARATH; Pentatricopeptide repeat-containing protein At3g56030, mitochondrial
TrEMBLD7T4L80.0D7T4L8_VITVI; Uncharacterized protein
STRINGVIT_13s0067g01440.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.25e-63sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Carrie C,Venne AS,Zahedi RP,Soll J
    Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(9): p. 2691-708
    [PMID:25732537]