PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032776001
Common NameVIT_13s0067g01500
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 492aa    MW: 55397.2 Da    PI: 9.5565
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032776001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.73.9e-31164217255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +F++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+
  GSVIVT01032776001 164 PRLRWTPDLHLCFLHAVERLGGQDRATPKLVLQLMDIKGLSISHVKSHLQMYRS 217
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-29160218IPR009057Homeodomain-like
PROSITE profilePS5129412.261160220IPR017930Myb domain
SuperFamilySSF466892.69E-14162218IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-23164219IPR006447Myb domain, plants
PfamPF002493.2E-8165216IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MYYYYLLFIV AVLVYHISNQ PLHDLLGRKG KIGQKKCYLR VNLVTIRSFS KREKSFSTCQ  60
GLGFQFPNAV EPCPATALVV FFFFFGLRIV REKMKEMKGA GDSSTEGSKT TSFSNQEGEE  120
GEEEEVDEYK KTKNGGSSSN STVEESERKA GSGSVRRYVR SKMPRLRWTP DLHLCFLHAV  180
ERLGGQDRAT PKLVLQLMDI KGLSISHVKS HLQMYRSKKI DDPNQVMMEQ GLFIEGGDHH  240
IYKLSHLPML QSFNRRPDTS GFRYDSASAS WRASMANQTY SPYRGGDASD RSKNGGYSSV  300
SERIFRSNKG SSVLNYEFHV GNSSFNGQAT WNNAHHTREE FQLYSQSHGS WRSQIRPSSI  360
QSNYLQPQVL ESRKQQVNRL NNPPPPQENQ KTMLKRKSSD SNFDLDLNLS LKPAPKSHDH  420
HLEKMDSTEI DSSLSLSLFS PPPSKLSRVK EGDGSRKHAE GATAGTEGNS HCVSSSSSFV  480
VSLWIICMEE I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4629310.0AM462931.1 Vitis vinifera contig VV78X218649.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273049.20.0PREDICTED: uncharacterized protein LOC100263821
TrEMBLF6HCA90.0F6HCA9_VITVI; Uncharacterized protein
STRINGVIT_13s0067g01500.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.18e-46G2-like family protein