PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01030322001 | ||||||||
Common Name | VIT_08s0058g00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Trihelix | ||||||||
Protein Properties | Length: 227aa MW: 25355.9 Da PI: 10.0037 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.3 | 2e-13 | 33 | 116 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea ++ +l+rg+l++++W+ev++++ r+ g+ +++ +qCk++++ l+k+yk +k s++p++++l+ GSVIVT01030322001 33 CWSEGATETLVEAWGDRYLELNRGNLRQKDWKEVADAVnsRQNGVkpRKTYIQCKNRIDTLKKKYKLEKSKPAP------SSWPFYSRLD 116 7*************************************8877777546799***************99988775......57****9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.9E-26 | 31 | 116 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDNQAAHPNP RSHHHPFGGG GGGGGGGGGR EDCWSEGATE TLVEAWGDRY LELNRGNLRQ 60 KDWKEVADAV NSRQNGVKPR KTYIQCKNRI DTLKKKYKLE KSKPAPSSWP FYSRLDYLIG 120 AAAAAAPGGK KFAAAAQRKL QKHRMDSMDL SDGAACRELA RAILKFGEIY ERIECAKQQQ 180 MMDLEKQKME FTKDLEVQRM HMFMDAQLEL EKMKHPKFAS GSGKKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ382884 | 0.0 | FQ382884.1 Vitis vinifera clone SS0ABG3YG15. | |||
GenBank | FQ392571 | 0.0 | FQ392571.1 Vitis vinifera clone SS0AFA5YC12. | |||
GenBank | FQ392653 | 0.0 | FQ392653.1 Vitis vinifera clone SS0AFA4YM15. | |||
GenBank | FQ393230 | 0.0 | FQ393230.1 Vitis vinifera clone SS0AFA2YA22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618398.1 | 5e-95 | trihelix transcription factor ASIL2 isoform X5 | ||||
Swissprot | Q9LJG8 | 2e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | F6GXV1 | 1e-138 | F6GXV1_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0058g00200.t01 | 1e-139 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP487 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-67 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01030322001 |